RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DHX15O43143 795 aaKnown RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 HERVK_113P62684 666 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 LBX2Q6XYB7 198 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 CPLX3Q8WVH0 158 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 SEMA6BQ9H3T3 888 aa18.38■□□□□ 0.53
USP4-201ENST00000265560 AGO4Q9HCK5 861 aaKnown RBP18.38■□□□□ 0.53
USP4-201ENST00000265560 MYL1P05976 194 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 PGK2P07205 417 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 IRF2BP1Q8IU81 584 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 REEP2Q9BRK0 252 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 UBIAD1Q9Y5Z9 338 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 ASTN1O14525 1302 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 CDC25BP30305 580 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 APTXQ7Z2E3 356 aaKnown RBP18.37■□□□□ 0.53
USP4-201ENST00000265560 LXNQ9BS40 222 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 JADE2Q9NQC1 790 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 RABGAP1Q9Y3P9 1069 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 KIAA1217Q5T5P2 1943 aa18.37■□□□□ 0.53
USP4-201ENST00000265560 RGS20O76081 388 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 PPP2R5CQ13362 524 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 STIM1Q13586 685 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 KRT31Q15323 416 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 CDKAL1Q5VV42 579 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 ARMCX5Q6P1M9 558 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 CNNM4Q6P4Q7 775 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 MIER3Q7Z3K6 550 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 LRRC8AQ8IWT6 810 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 CSGALNACT2Q8N6G5 542 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 IKZF4Q9H2S9 585 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 FDX1P10109 184 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 CASP5P51878 434 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 DUSP9Q99956 384 aaKnown RBP18.36■□□□□ 0.53
USP4-201ENST00000265560 SPATC1LQ9H0A9 340 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 SETQ01105 290 aaPredicted RBP18.36■□□□□ 0.53
USP4-201ENST00000265560 TTI2Q6NXR4 508 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 VSIG10LQ86VR7 867 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 P2RX5Q93086 422 aa18.36■□□□□ 0.53
USP4-201ENST00000265560 KCNJ18B7U540 433 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 MOGSQ13724 837 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 KCNJ12Q14500 433 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 UTP14CQ5TAP6 766 aaKnown RBP18.35■□□□□ 0.53
USP4-201ENST00000265560 NSUN6Q8TEA1 469 aaKnown RBP18.35■□□□□ 0.53
USP4-201ENST00000265560 MOV10L1Q9BXT6 1211 aaKnown RBP18.35■□□□□ 0.53
USP4-201ENST00000265560 CELF2O95319 508 aaKnown RBP18.35■□□□□ 0.53
USP4-201ENST00000265560 CCNE2O96020 404 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 GIT2Q14161 759 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 FAM26FQ5R3K3 315 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 CEP135Q66GS9 1140 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 CEP350Q5VT06 3117 aa18.35■□□□□ 0.53
USP4-201ENST00000265560 N4BP3O15049 544 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 OAZ1P54368 228 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 ADKP55263 362 aaKnown RBP18.34■□□□□ 0.53
USP4-201ENST00000265560 SEMA3FQ13275 785 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 PPIL2Q13356 520 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 UGCGQ16739 394 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 SEPT14Q6ZU15 432 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 SYT2Q8N9I0 419 aaPredicted RBP18.34■□□□□ 0.53
USP4-201ENST00000265560 RBPJLQ9UBG7 517 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 PAPPA2Q9BXP8 1791 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 PVALEFA0A1B0GWK0 134 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 CXCL11O14625 94 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 TCP11X2Q5H9J9 407 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 SFR1Q86XK3 245 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 KSR1Q8IVT5 923 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 VSTM4Q8IW00 320 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 POLR3CQ9BUI4 534 aaPredicted RBP18.34■□□□□ 0.53
USP4-201ENST00000265560 AGTPBP1Q9UPW5 1226 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 LDLRAD1Q5T700 205 aa18.34■□□□□ 0.53
USP4-201ENST00000265560 SCN4AP35499 1836 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 CBFA2T2O43439 604 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 CCND2P30279 289 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 HOXA7P31268 230 aaPredicted RBP18.33■□□□□ 0.53
USP4-201ENST00000265560 GHRHRQ02643 423 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 KCNA1Q09470 495 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 NR1I3Q14994 352 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 GPAT2Q6NUI2 795 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 RINT1Q6NUQ1 792 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 PROCA1Q8NCQ7 364 aaPredicted RBP18.33■□□□□ 0.53
USP4-201ENST00000265560 ADD3Q9UEY8 706 aaKnown RBP18.33■□□□□ 0.53
USP4-201ENST00000265560 KCNH4Q9UQ05 1017 aa18.33■□□□□ 0.53
USP4-201ENST00000265560 ATP2A1O14983 1001 aa18.33■□□□□ 0.52
USP4-201ENST00000265560 CNMDO75829 334 aa18.33■□□□□ 0.52
USP4-201ENST00000265560 SKILP12757 684 aa18.33■□□□□ 0.52
USP4-201ENST00000265560 CCNE1P24864 410 aa18.33■□□□□ 0.52
USP4-201ENST00000265560 RIT2Q99578 217 aa18.33■□□□□ 0.52
USP4-201ENST00000265560 TCEAL9Q9UHQ7 104 aa18.33■□□□□ 0.52
USP4-201ENST00000265560 PRKCSHP14314 528 aaPredicted RBP18.32■□□□□ 0.52
USP4-201ENST00000265560 SP2Q02086 613 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 EHHADHQ08426 723 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 EPHA7Q15375 998 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 B3GNT9Q6UX72 402 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 CCDC65Q8IXS2 484 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 DHTKD1Q96HY7 919 aaPredicted RBP18.32■□□□□ 0.52
USP4-201ENST00000265560 A0A1B0GTH6 734 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 PRPF6O94906 941 aaKnown RBP18.32■□□□□ 0.52
USP4-201ENST00000265560 EYA4O95677 639 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 PORCNQ9H237 461 aa18.32■□□□□ 0.52
USP4-201ENST00000265560 MYBP10242 640 aa18.31■□□□□ 0.52
USP4-201ENST00000265560 COPB1P53618 953 aaKnown RBP18.31■□□□□ 0.52
USP4-201ENST00000265560 PLA2G4FQ68DD2 849 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms