RNA–Protein interactions for RNA: ENST00000261037.7

COL8A1-201, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL8A1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-201ENST00000261037 KANSL2Q9H9L4 492 aa13.1□□□□□ -0.31
COL8A1-201ENST00000261037 EMILIN3Q9NT22 766 aa13.1□□□□□ -0.31
COL8A1-201ENST00000261037 CDC23Q9UJX2 597 aa13.1□□□□□ -0.31
COL8A1-201ENST00000261037 DAAM1Q9Y4D1 1078 aa13.1□□□□□ -0.31
COL8A1-201ENST00000261037 TOM1L1O75674 476 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 MSH2P43246 934 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 CACNB3P54284 484 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 HP1BP3Q5SSJ5 553 aaPredicted RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 NLRP10Q86W26 655 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 STAG1Q8WVM7 1258 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 RUNDC3BQ96NL0 473 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 GPR108Q9NPR9 543 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 SERPINB13Q9UIV8 391 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 INPP5FQ9Y2H2 1132 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 GOLGA8CPA6NN73 597 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 TRAPPC10P48553 1259 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 TDRD7Q8NHU6 1098 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 CACTINQ8WUQ7 758 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 MRPL46Q9H2W6 279 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 TPX2Q9ULW0 747 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 MX2P20592 715 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 MRPS25P82663 173 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 IQCB1Q15051 598 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 TCP11X2Q5H9J9 407 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 SDCCAG3Q96C92 435 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 PCDHA13Q9Y5I0 950 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 IRX4P78413 519 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 IFT88Q13099 833 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 THOC5Q13769 683 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 FAM133BQ5BKY9 247 aaKnown RBP13.09□□□□□ -0.31
COL8A1-201ENST00000261037 CC2D2BQ6DHV5 1058 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 SLC17A8Q8NDX2 589 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 WDR11Q9BZH6 1224 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 STK17AQ9UEE5 414 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 RWDD2AQ9UIY3 292 aa13.09□□□□□ -0.31
COL8A1-201ENST00000261037 SPECC1L-ADORA2AF8WAN1 911 aa13.08□□□□□ -0.31
COL8A1-201ENST00000261037 ZNF500O60304 480 aaPredicted RBP13.08□□□□□ -0.31
COL8A1-201ENST00000261037 PSAPP07602 524 aa13.08□□□□□ -0.31
COL8A1-201ENST00000261037 MYL3P08590 195 aa13.08□□□□□ -0.31
COL8A1-201ENST00000261037 SH3RF3Q8TEJ3 882 aaPredicted RBP13.08□□□□□ -0.31
COL8A1-201ENST00000261037 DEPDC1BQ8WUY9 529 aa13.08□□□□□ -0.31
COL8A1-201ENST00000261037 TRIM11Q96F44 468 aa13.08□□□□□ -0.31
COL8A1-201ENST00000261037 NLRP4Q96MN2 994 aa13.08□□□□□ -0.31
COL8A1-201ENST00000261037 ADD3Q9UEY8 706 aaKnown RBP13.08□□□□□ -0.31
COL8A1-201ENST00000261037 TRPC5Q9UL62 973 aaPredicted RBP13.08□□□□□ -0.31
COL8A1-201ENST00000261037 CDK8P49336 464 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 LMNB2Q03252 620 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 LINC00301Q8NCQ3 95 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 TMEM206Q9H813 350 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 IRAK4Q9NWZ3 460 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 ARL4AP40617 200 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 SUSD4Q5VX71 490 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 CDC26Q8NHZ8 85 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 EXT2Q93063 718 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 ALKBH8Q96BT7 664 aaKnown RBP13.08□□□□□ -0.32
COL8A1-201ENST00000261037 PNMA2Q9UL42 364 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 USP6P35125 1406 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 CYP2D6P10635 497 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 NVLO15381 856 aaKnown RBP13.08□□□□□ -0.32
COL8A1-201ENST00000261037 MED7O43513 233 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 PLS3P13797 630 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 C10orf76Q5T2E6 689 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 ARMC9Q7Z3E5 817 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 SIX6OS1Q8N1H7 587 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 ZNF341Q9BYN7 854 aa13.08□□□□□ -0.32
COL8A1-201ENST00000261037 WDR17Q8IZU2 1322 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 PGRMC1O00264 195 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 PRPF3O43395 683 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 TTC4O95801 387 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 ZNF18P17022 549 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 RASGRF1Q13972 1273 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 SNCBQ16143 134 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 KIAA1841Q6NSI8 718 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 BBS5Q8N3I7 341 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 MSTO1Q9BUK6 570 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 PARVGQ9HBI0 331 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 LRRD1A4D1F6 860 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 STX1BP61266 288 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 CCDC197Q8NCU1 140 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 BANK1Q8NDB2 785 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 OLA1Q9NTK5 396 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 CPSF3Q9UKF6 684 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 USH1CQ9Y6N9 552 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 EIF3CLB5ME19 914 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 GNGT2O14610 69 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 EIF3CQ99613 913 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 LRRC4Q9HBW1 653 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 PRPSAP2O60256 369 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 DHX9Q08211 1270 aaKnown RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 ZNF710Q8N1W2 664 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 PIGOQ8TEQ8 1089 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 FAM49AQ9H0Q0 323 aaPredicted RBP13.07□□□□□ -0.32
COL8A1-201ENST00000261037 FAN1Q9Y2M0 1017 aa13.07□□□□□ -0.32
COL8A1-201ENST00000261037 PPP1R12AO14974 1030 aaPredicted RBP13.06□□□□□ -0.32
COL8A1-201ENST00000261037 GSTA4O15217 222 aa13.06□□□□□ -0.32
COL8A1-201ENST00000261037 SUN1O94901 812 aa13.06□□□□□ -0.32
COL8A1-201ENST00000261037 SLFN14P0C7P3 912 aa13.06□□□□□ -0.32
COL8A1-201ENST00000261037 PTPN12Q05209 780 aaKnown RBP13.06□□□□□ -0.32
COL8A1-201ENST00000261037 SUPT20HL1Q3ZLR7 823 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms