RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 C10orf88Q9H8K7 445 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 TRPC7Q9HCX4 862 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 IL1RAPL2Q9NP60 686 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 STRN4Q9NRL3 753 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 SEPT11Q9NVA2 429 aaKnown RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 CYP39A1Q9NYL5 469 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 CCPG1Q9ULG6 757 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 TTC7AQ9ULT0 858 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-216ENST00000637968 PCDHA7Q9UN72 937 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 DAPK1P53355 1430 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 ATP10BO94823 1461 aa6.21□□□□□ -1.41
SCN1A-216ENST00000637968 GCC2Q8IWJ2 1684 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 CCDC169A6NNP5 214 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 SYCE1LA8MT33 242 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ATP1A1P05023 1023 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 LDHBP07195 334 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TKTP29401 623 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ATP5DP30049 168 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 EIF3BP55884 814 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 IRX4P78413 519 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 C15orf59Q2T9L4 293 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 LIN52Q52LA3 116 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 SLC2A7Q6PXP3 512 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 KIAA2013Q8IYS2 634 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 VPS50Q96JG6 964 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 PRPF18Q99633 342 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ZSWIM6Q9HCJ5 1215 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 KCNK9Q9NPC2 374 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 DISC1Q9NRI5 854 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ZBTB21Q9ULJ3 1066 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 LZTS1Q9Y250 596 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ARL2BPQ9Y2Y0 163 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 LRRC42Q9Y546 428 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TRIM17Q9Y577 477 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 SPO11Q9Y5K1 396 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 NOTOA8MTQ0 251 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 DNAJC6O75061 913 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 GLRX3O76003 335 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ESRRBO95718 433 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 BAG2O95816 211 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 POLR3DP05423 398 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 BTG3Q14201 252 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ARHGEF6Q15052 776 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 RAD9BQ6WBX8 426 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TCEANC2Q96MN5 208 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 SLX1AQ9BQ83 275 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 LRRC27Q9C0I9 530 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 MRPL46Q9H2W6 279 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TMBIM4Q9HC24 238 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ETNK2Q9NVF9 386 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 NKIRAS1Q9NYS0 192 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 EMILIN1Q9Y6C2 1016 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 MBD5Q9P267 1494 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 EIF4G3O43432 1585 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TSPY2A6NKD2 308 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 GOLGA8BA8MQT2 603 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 PSMD14O00487 310 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 NOL3O60936 208 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TJP3O95049 919 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TSPY3P0CV98 308 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TSPY8P0CW00 308 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 GFAPP14136 432 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TSPY1Q01534 308 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 IDI1Q13907 227 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 SMUG1Q53HV7 270 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 FBXO31Q5XUX0 539 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 PDZD8Q8NEN9 1154 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TTLL11Q8NHH1 800 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 NELFBQ8WX92 580 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 NACC2Q96BF6 587 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 NGLY1Q96IV0 654 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 RPAP3Q9H6T3 665 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ADAM22Q9P0K1 906 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 HMG20BQ9P0W2 317 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 RNF14Q9UBS8 474 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ZRANB1Q9UGI0 708 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 TRIM35Q9UPQ4 493 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 RBM8AQ9Y5S9 174 aaKnown RBP6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ZNF518AQ6AHZ1 1483 aa6.21□□□□□ -1.42
SCN1A-216ENST00000637968 ATP9BO43861 1147 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 IGHMBP2P38935 993 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 PDE4BQ07343 736 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 PPIDQ08752 370 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ITGA9Q13797 1035 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 SPIDRQ14159 915 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 EIF4A2Q14240 407 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 PABPC1LQ4VXU2 614 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 WASHC2DQ5SRD0 308 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 C6orf118Q5T5N4 469 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 TOM1L2Q6ZVM7 507 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 EVI5LQ96CN4 794 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 PSMB7Q99436 277 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 CABP2Q9NPB3 220 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 TCP11L1Q9NUJ3 509 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 ZMAT5Q9UDW3 170 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 AMOTL2Q9Y2J4 779 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.2□□□□□ -1.42
SCN1A-216ENST00000637968 IVNS1ABPQ9Y6Y0 642 aa6.2□□□□□ -1.42
SCN1A-216ENST00000637968 GNAT3A8MTJ3 354 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms