RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PSMC6P62333 389 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 NT5DC1Q5TFE4 455 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 PARK7Q99497 189 aaKnown RBP22.57■■□□□ 1.2
CLN3-250ENST00000636839 CBX8Q9HC52 389 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 CPA4Q9UI42 421 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 TELO2Q9Y4R8 837 aa22.57■■□□□ 1.2
CLN3-250ENST00000636839 TMEM88BA6NKF7 163 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 SORBS3O60504 671 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 TOMM70O94826 608 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 PPP2R5CQ13362 524 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 B3GNT9Q6UX72 402 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 INPP4AQ96PE3 977 aaPredicted RBP22.56■■□□□ 1.2
CLN3-250ENST00000636839 EIF2AK1Q9BQI3 630 aaKnown RBP22.56■■□□□ 1.2
CLN3-250ENST00000636839 MROH8Q9H579 483 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 ANO10Q9NW15 660 aa22.56■■□□□ 1.2
CLN3-250ENST00000636839 MANSC4A6NHS7 340 aaPredicted RBP22.55■■□□□ 1.2
CLN3-250ENST00000636839 ZNF165P49910 485 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 KCTD2Q14681 263 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 DNERQ8NFT8 737 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 GTPBP6O43824 516 aaPredicted RBP22.55■■□□□ 1.2
CLN3-250ENST00000636839 GCLCP48506 637 aaPredicted RBP22.55■■□□□ 1.2
CLN3-250ENST00000636839 CTTNQ14247 550 aaKnown RBP22.55■■□□□ 1.2
CLN3-250ENST00000636839 HYIQ5T013 277 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 EEPD1Q7L9B9 569 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 RAD54LQ92698 747 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 RIT2Q99578 217 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 TEKT3Q9BXF9 490 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 MORF4L1Q9UBU8 362 aa22.55■■□□□ 1.2
CLN3-250ENST00000636839 DNAJC25-GNG10A0A024R161 153 aa22.54■■□□□ 1.2
CLN3-250ENST00000636839 FCER1AP12319 257 aa22.54■■□□□ 1.2
CLN3-250ENST00000636839 XRRA1Q6P2D8 792 aa22.54■■□□□ 1.2
CLN3-250ENST00000636839 PAXIP1Q6ZW49 1069 aaPredicted RBP22.54■■□□□ 1.2
CLN3-250ENST00000636839 FAM200AQ8TCP9 573 aa22.54■■□□□ 1.2
CLN3-250ENST00000636839 GTF3C2Q8WUA4 911 aaPredicted RBP22.54■■□□□ 1.2
CLN3-250ENST00000636839 HSD17B14Q9BPX1 270 aa22.54■■□□□ 1.2
CLN3-250ENST00000636839 PCNTO95613 3336 aa22.54■■□□□ 1.2
CLN3-250ENST00000636839 ZBTB39O15060 712 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 SLITRK3O94933 977 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 RPA1P27694 616 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 SP2Q02086 613 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 MORC3Q14149 939 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 CYP4F22Q6NT55 531 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 IFNL1Q8IU54 200 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 SMYD4Q8IYR2 804 aaPredicted RBP22.53■■□□□ 1.2
CLN3-250ENST00000636839 SHCBP1Q8NEM2 672 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 LARP4BQ92615 738 aaKnown RBP22.53■■□□□ 1.2
CLN3-250ENST00000636839 DYDC2Q96IM9 177 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 IWS1Q96ST2 819 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 MAF1Q9H063 256 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 WRAP73Q9P2S5 460 aaPredicted RBP22.53■■□□□ 1.2
CLN3-250ENST00000636839 STXBP2Q15833 593 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 SEPT14Q6ZU15 432 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 ERMNQ8TAM6 284 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 CCDC34Q96HJ3 373 aa22.53■■□□□ 1.2
CLN3-250ENST00000636839 MYMKA6NI61 221 aa22.52■■□□□ 1.2
CLN3-250ENST00000636839 SMC2O95347 1197 aa22.52■■□□□ 1.2
CLN3-250ENST00000636839 CCNE2O96020 404 aa22.52■■□□□ 1.2
CLN3-250ENST00000636839 COPB2P35606 906 aa22.52■■□□□ 1.2
CLN3-250ENST00000636839 L1TD1Q5T7N2 865 aaKnown RBP22.52■■□□□ 1.2
CLN3-250ENST00000636839 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLN3-250ENST00000636839 TPH2Q8IWU9 490 aa22.52■■□□□ 1.2
CLN3-250ENST00000636839 CUEDC2Q9H467 287 aa22.52■■□□□ 1.2
CLN3-250ENST00000636839 KLRC4O43908 158 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 COBLO75128 1261 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 RPN1P04843 607 aaKnown RBP22.52■■□□□ 1.19
CLN3-250ENST00000636839 SSBP05455 408 aaKnown RBP eCLIP22.52■■□□□ 1.19
CLN3-250ENST00000636839 EDNRBP24530 442 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 CCNA1P78396 465 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 IQCB1Q15051 598 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 TAF1CQ15572 869 aaPredicted RBP22.52■■□□□ 1.19
CLN3-250ENST00000636839 SV2BQ7L1I2 683 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 BANK1Q8NDB2 785 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 GPRASP2Q96D09 838 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 TRIM9Q9C026 710 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 STK17AQ9UEE5 414 aa22.52■■□□□ 1.19
CLN3-250ENST00000636839 EIF3JO75822 258 aaKnown RBP22.51■■□□□ 1.19
CLN3-250ENST00000636839 KCNA2P16389 499 aa22.51■■□□□ 1.19
CLN3-250ENST00000636839 HAUS3Q68CZ6 603 aa22.51■■□□□ 1.19
CLN3-250ENST00000636839 DYMQ7RTS9 669 aa22.51■■□□□ 1.19
CLN3-250ENST00000636839 NLRX1Q86UT6 975 aa22.51■■□□□ 1.19
CLN3-250ENST00000636839 DHX40Q8IX18 779 aaKnown RBP22.51■■□□□ 1.19
CLN3-250ENST00000636839 ZNF784Q8NCA9 323 aaPredicted RBP22.51■■□□□ 1.19
CLN3-250ENST00000636839 CCDC102AQ96A19 550 aa22.51■■□□□ 1.19
CLN3-250ENST00000636839 POLR3CQ9BUI4 534 aaPredicted RBP22.51■■□□□ 1.19
CLN3-250ENST00000636839 ADD3Q9UEY8 706 aaKnown RBP22.51■■□□□ 1.19
CLN3-250ENST00000636839 ADGRA2Q96PE1 1338 aa22.51■■□□□ 1.19
CLN3-250ENST00000636839 SPATA31C2B4DYI2 1134 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 ADORA2AP29274 412 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 PDE4DQ08499 809 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 FAM110CQ1W6H9 321 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 PIGOQ8TEQ8 1089 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 GSDMAQ96QA5 445 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 NT5C3AQ9H0P0 336 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 KDM3AQ9Y4C1 1321 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 NPHP3-ACAD11A0A0J9YXS1 232 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 PLA2G4BP0C869 781 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 CD44P16070 742 aaKnown RBP22.5■■□□□ 1.19
CLN3-250ENST00000636839 SP4Q02446 784 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 C7orf25Q9BPX7 421 aa22.5■■□□□ 1.19
CLN3-250ENST00000636839 TBC1D22BQ9NU19 505 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms