RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CELF4Q9BZC1 486 aaKnown RBP12.05□□□□□ -0.48
CLN3-244ENST00000636147 CUEDC2Q9H467 287 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 ARPP21Q9UBL0 812 aaPredicted RBP12.05□□□□□ -0.48
CLN3-244ENST00000636147 TBK1Q9UHD2 729 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 MTUS1Q9ULD2 1270 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 PREX1Q8TCU6 1659 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 LRRC10BA6NIK2 292 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 ENO4A6NNW6 628 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 TTI1O43156 1089 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 RHOBTB3O94955 611 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 CETN1Q12798 172 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 TRADDQ15628 312 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 PKN1Q16512 942 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 CAPN12Q6ZSI9 719 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 RNF10Q8N5U6 811 aaKnown RBP12.05□□□□□ -0.48
CLN3-244ENST00000636147 SGSM3Q96HU1 749 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 HOMER3Q9NSC5 361 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 ITSN1Q15811 1721 aa12.05□□□□□ -0.48
CLN3-244ENST00000636147 CLIC2O15247 247 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 MYL1P05976 194 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 RPL13P26373 211 aaKnown RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 ADCY7P51828 1080 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 RBM5P52756 815 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-244ENST00000636147 CUL1Q13616 776 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 KCNB1Q14721 858 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 PDXDC1Q6P996 788 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 KDM7AQ6ZMT4 941 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 MAEAQ7L5Y9 396 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 HS2ST1Q7LGA3 356 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 TMX4Q9H1E5 349 aaPredicted RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 PLCB1Q9NQ66 1216 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 SIGLEC1Q9BZZ2 1709 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 FAM13AO94988 1023 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 HSD17B3P37058 310 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 TROAPQ12815 778 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 BIRC3Q13489 604 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 GSTA5Q7RTV2 222 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 SH3RF1Q7Z6J0 888 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 NBPF5PQ86XG9 351 aaPredicted RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 NEK9Q8TD19 979 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 ARHGEF2Q92974 986 aaKnown RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 CHMP6Q96FZ7 201 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 AK8Q96MA6 479 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 NLRP3Q96P20 1036 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 PIGSQ96S52 555 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 CCDC77Q9BR77 488 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 TRIM51Q9BSJ1 452 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 SPATS2LQ9NUQ6 558 aaKnown RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.04□□□□□ -0.48
CLN3-244ENST00000636147 CHMP2AO43633 222 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 KIF1CO43896 1103 aaKnown RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 COPB2P35606 906 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 PRPHP41219 470 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 SMTNP53814 917 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 CYP4A11Q02928 519 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 LRRC47Q8N1G4 583 aaKnown RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 ERMNQ8TAM6 284 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 RPGRQ92834 1020 aaKnown RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 LBHD1Q9BQE6 289 aaPredicted RBP12.04□□□□□ -0.48
CLN3-244ENST00000636147 KLHL14Q9P2G3 628 aa12.04□□□□□ -0.48
CLN3-244ENST00000636147 H0Y3Z8 333 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 LRRN2O75325 713 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 ZNF131P52739 623 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 MEX3CQ5U5Q3 659 aaKnown RBP12.03□□□□□ -0.48
CLN3-244ENST00000636147 AP1ARQ63HQ0 302 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 APTXQ7Z2E3 356 aaKnown RBP12.03□□□□□ -0.48
CLN3-244ENST00000636147 EYA3Q99504 573 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 TLR10Q9BXR5 811 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 PACSIN1Q9BY11 444 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 ZMYND12Q9H0C1 365 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 FAM114A2Q9NRY5 505 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 NOC2LQ9Y3T9 749 aaKnown RBP12.03□□□□□ -0.48
CLN3-244ENST00000636147 TECPR2O15040 1411 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 DIAPH2O60879 1101 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 SUN1O94901 812 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 ACSL3O95573 720 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 PRDX5P30044 214 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 PABPC4Q13310 644 aaKnown RBP eCLIP12.03□□□□□ -0.483e-6■■■■□ 26.6
CLN3-244ENST00000636147 SUSD4Q5VX71 490 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 LMNTD2Q8IXW0 634 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 KIF2BQ8N4N8 673 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 MSL3Q8N5Y2 521 aaKnown RBP12.03□□□□□ -0.48
CLN3-244ENST00000636147 ZKSCAN4Q969J2 545 aaPredicted RBP12.03□□□□□ -0.48
CLN3-244ENST00000636147 PBKQ96KB5 322 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 AZI2Q9H6S1 392 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 VCPKMTQ9H867 229 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 TMEM260Q9NX78 707 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 A0A087X0T9 212 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 ZNF233A6NK53 670 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 MEIS1O00470 390 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 FAM228BP0C875 321 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 ACTN1P12814 892 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 PAX7P23759 505 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 MESDQ14696 234 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 TAF11Q15544 211 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 CDC37Q16543 378 aaPredicted RBP12.03□□□□□ -0.48
CLN3-244ENST00000636147 PIGBQ92521 554 aa12.03□□□□□ -0.48
CLN3-244ENST00000636147 C6orf229H3BNL8 230 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 TRIM37O94972 964 aa12.02□□□□□ -0.48
CLN3-244ENST00000636147 CDC25CP30307 473 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms