RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 ALG1Q9BT22 464 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 ZSWIM6Q9HCJ5 1215 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 CHD7Q9P2D1 2997 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 HDAC6Q9UBN7 1215 aa16.98■□□□□ 0.31
LINC00643-205ENST00000623219 UNC80Q8N2C7 3258 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 TRANK1O15050 2925 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 NLRC5Q86WI3 1866 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 MYO9BQ13459 2157 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.97■□□□□ 0.31
LINC00643-205ENST00000623219 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.97■□□□□ 0.31
LINC00643-205ENST00000623219 LGALS2P05162 132 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 SCG2P13521 617 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 EVCP57679 992 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 RBL2Q08999 1139 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 AP3B2Q13367 1082 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 CYFIP1Q7L576 1253 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 CTAGE1Q96RT6 745 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 C16orf70Q9BSU1 422 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 TM6SF1Q9BZW5 370 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 CYP46A1Q9Y6A2 500 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 EVPLQ92817 2033 aa16.97■□□□□ 0.31
LINC00643-205ENST00000623219 COL4A4P53420 1690 aaPredicted RBP16.97■□□□□ 0.31
LINC00643-205ENST00000623219 FOSP01100 380 aaPredicted RBP16.96■□□□□ 0.31
LINC00643-205ENST00000623219 FGBP02675 491 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 KCNA2P16389 499 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 ITGB5P18084 799 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 CLK2P49760 499 aaKnown RBP16.96■□□□□ 0.31
LINC00643-205ENST00000623219 MTMR1Q13613 665 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 RETREG2Q8NC44 543 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 AFAP1L1Q8TED9 768 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 CCDC12Q8WUD4 166 aaPredicted RBP16.96■□□□□ 0.31
LINC00643-205ENST00000623219 GPR20Q99678 358 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 RNF26Q9BY78 433 aaPredicted RBP16.96■□□□□ 0.31
LINC00643-205ENST00000623219 ANO3Q9BYT9 981 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 BCAS3Q9H6U6 928 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 UBIAD1Q9Y5Z9 338 aa16.96■□□□□ 0.31
LINC00643-205ENST00000623219 ESYT2A0FGR8 921 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 SMCO2A6NFE2 343 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 H3BRB1 525 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 IQCF3P0C7M6 154 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 DNAJB2P25686 324 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 TOB2Q14106 344 aaPredicted RBP16.95■□□□□ 0.3
LINC00643-205ENST00000623219 TUT1Q9H6E5 874 aaKnown RBP16.95■□□□□ 0.3
LINC00643-205ENST00000623219 JADE2Q9NQC1 790 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 ZNF215Q9UL58 517 aaPredicted RBP16.95■□□□□ 0.3
LINC00643-205ENST00000623219 STXBP5LQ9Y2K9 1186 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 PRUNE2Q8WUY3 3088 aa16.95■□□□□ 0.3
LINC00643-205ENST00000623219 MAFGO15525 162 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 PRPF3O43395 683 aaKnown RBP16.94■□□□□ 0.3
LINC00643-205ENST00000623219 PARNO95453 639 aaKnown RBP16.94■□□□□ 0.3
LINC00643-205ENST00000623219 PDIA3P30101 505 aaKnown RBP16.94■□□□□ 0.3
LINC00643-205ENST00000623219 HOXC8P31273 242 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 SREBF1P36956 1147 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 PTK7Q13308 1070 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 NTRK3Q16288 839 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 OTOP2Q7RTS6 562 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 DHX38Q92620 1227 aaKnown RBP16.94■□□□□ 0.3
LINC00643-205ENST00000623219 VWCEQ96DN2 955 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 GUCD1Q96NT3 240 aa16.94■□□□□ 0.3
LINC00643-205ENST00000623219 CXXC1Q9P0U4 656 aaPredicted RBP16.94■□□□□ 0.3
LINC00643-205ENST00000623219 ATP9AO75110 1047 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 ACTN1P12814 892 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 IFNAR1P17181 557 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 AKAP17AQ02040 695 aaKnown RBP16.93■□□□□ 0.3
LINC00643-205ENST00000623219 SP4Q02446 784 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 PKN1Q16512 942 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 LRRC8DQ7L1W4 858 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 DEFB128Q7Z7B8 93 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 PHKBQ93100 1093 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 PGBD1Q96JS3 809 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 FAM161BQ96MY7 647 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 MXRA8Q9BRK3 442 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 UPF3BQ9BZI7 483 aaKnown RBP16.93■□□□□ 0.3
LINC00643-205ENST00000623219 ZMYND12Q9H0C1 365 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 TTYH1Q9H313 450 aaPredicted RBP16.93■□□□□ 0.3
LINC00643-205ENST00000623219 RALGAPA2Q2PPJ7 1873 aa16.93■□□□□ 0.3
LINC00643-205ENST00000623219 C17orf102A2RUQ5 167 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 SMIM10L2AP0DMW4 78 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 SMIM10L2BP0DMW5 78 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 CKBP12277 381 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 SELPP16109 830 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 TCF7P36402 384 aaPredicted RBP16.92■□□□□ 0.3
LINC00643-205ENST00000623219 MCTP2Q6DN12 878 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 TRIM50Q86XT4 487 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 CCDC148Q8NFR7 591 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 ZNF274Q96GC6 653 aaPredicted RBP16.92■□□□□ 0.3
LINC00643-205ENST00000623219 PBX4Q9BYU1 374 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 NCOA5Q9HCD5 579 aaKnown RBP16.92■□□□□ 0.3
LINC00643-205ENST00000623219 C6orf50Q9HD87 102 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 TMEM260Q9NX78 707 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 REV3LO60673 3130 aa16.92■□□□□ 0.3
LINC00643-205ENST00000623219 ZBBXA8MT70 800 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 EIF5BO60841 1220 aaKnown RBP16.91■□□□□ 0.3
LINC00643-205ENST00000623219 GNA11P29992 359 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 ANAPC15P60006 121 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 CCT2P78371 535 aaKnown RBP16.91■□□□□ 0.3
LINC00643-205ENST00000623219 HIC1Q14526 733 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 RAB30Q15771 203 aa16.91■□□□□ 0.3
LINC00643-205ENST00000623219 TRIM71Q2Q1W2 868 aaKnown RBP16.91■□□□□ 0.3
LINC00643-205ENST00000623219 CEP55Q53EZ4 464 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms