RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CCT8L1PA6NM43 557 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 PRPF3O43395 683 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 IDH1O75874 414 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 PDE6AP16499 860 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 HSD17B3P37058 310 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 EIF4A3P38919 411 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 MCAMP43121 646 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 PMS1P54277 932 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 RWDD2BP57060 319 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 MYO1EQ12965 1108 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 SPRED3Q2MJR0 410 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CDCA2Q69YH5 1023 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CAPRIN2Q6IMN6 1127 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 PI16Q6UXB8 463 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 ARHGAP27Q6ZUM4 889 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CCDC84Q86UT8 332 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 IFNL3Q8IZI9 196 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CCDC63Q8NA47 563 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 RAPGEF5Q92565 580 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CENPTQ96BT3 561 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 MASTLQ96GX5 879 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 RBM17Q96I25 401 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CNOT6LQ96LI5 555 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 KRT12Q99456 494 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 MOV10L1Q9BXT6 1211 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 NACAP1Q9BZK3 213 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 BSDC1Q9NW68 430 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 NOP53Q9NZM5 478 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 TRPC6Q9Y210 931 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 GOLGA6L10A0A0M3HER8 536 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CES2O00748 559 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 OPLAHO14841 1288 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 NCK2O43639 380 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 LUC7L3O95232 432 aaKnown RBP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 NPR1P16066 1061 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CCNE1P24864 410 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 ZNF844Q08AG5 666 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 HLTFQ14527 1009 aaKnown RBP eCLIP11.88□□□□□ -0.51
UPF3A-212ENST00000619079 ITIH4Q14624 930 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CACNA2D4Q7Z3S7 1137 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 TTLL11Q8NHH1 800 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 TNFRSF25Q93038 417 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 TBC1D31Q96DN5 1066 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 CHMP6Q96FZ7 201 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 SLC12A4Q9UP95 1085 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 NRXN2Q9P2S2 1712 aa11.88□□□□□ -0.51
UPF3A-212ENST00000619079 SSU72P8A0A1W2PR75 194 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 H0YGN5 161 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 MYBP10242 640 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 BYSLQ13895 437 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 CRY2Q49AN0 593 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 GRIPAP1Q4V328 841 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 EARS2Q5JPH6 523 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 BZW1Q7L1Q6 419 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 P2RX5Q93086 422 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 PLA2G12BQ9BX93 195 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 GREM2Q9H772 168 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 MAGEF1Q9HAY2 307 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 DISC1Q9NRI5 854 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 ETAA1Q9NY74 926 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 CORO1CQ9ULV4 474 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 NFS1Q9Y697 457 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 CHD4Q14839 1912 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 ZSCAN5CA6NGD5 496 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 PLEKP08567 350 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 GNAT2P19087 354 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 DRD4P21917 467 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 SSR1P43307 286 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 KLK7P49862 253 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 IFIT5Q13325 482 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 SF3B3Q15393 1217 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 PKN1Q16512 942 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 ACCSLQ4AC99 568 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 CMTR1Q8N1G2 835 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 STAMBPL1Q96FJ0 436 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 MS4A14Q96JA4 679 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 DUSP9Q99956 384 aaKnown RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 EDEM3Q9BZQ6 932 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 PIM2Q9P1W9 311 aa11.87□□□□□ -0.51
UPF3A-212ENST00000619079 ZNF219Q9P2Y4 722 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-212ENST00000619079 TCRBV5S4A2TA0A5A2 114 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ATP2C2O75185 946 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ANP32DO95626 131 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ITGA6P23229 1130 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ALDH1B1P30837 517 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 RRP12Q5JTH9 1297 aaKnown RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 MIIPQ5JXC2 388 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 CNKSR1Q969H4 720 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ANKRD27Q96NW4 1050 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 INPP4AQ96PE3 977 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 KIF9Q9HAQ2 790 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 EPB41L4AQ9HCS5 686 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 CPSF2Q9P2I0 782 aaKnown RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 BCS1LQ9Y276 419 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 RIC1Q4ADV7 1423 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ABCB11O95342 1321 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 MYH6P13533 1939 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 KLRG2A4D1S0 409 aaPredicted RBP11.86□□□□□ -0.51
UPF3A-212ENST00000619079 RBAK-RBAKDNI3L0D1 243 aa11.86□□□□□ -0.51
UPF3A-212ENST00000619079 ASAP2O43150 1006 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms