RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.21■□□□□ 0.036e-8■□□□□ 8.9
CPSF1-212ENST00000616140 TCP11Q8WWU5 503 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 PBKQ96KB5 322 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 ACCSQ96QU6 501 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 BPIFA3Q9BQP9 254 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 ANO3Q9BYT9 981 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 VCXQ9H320 206 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 BCS1LQ9Y276 419 aa15.21■□□□□ 0.03
CPSF1-212ENST00000616140 PNMA6FA0A0J9YX94 578 aa15.21■□□□□ 0.02
CPSF1-212ENST00000616140 ANKRD65E5RJM6 399 aa15.21■□□□□ 0.02
CPSF1-212ENST00000616140 H7C0C1 242 aa15.21■□□□□ 0.02
CPSF1-212ENST00000616140 ATP5OP48047 213 aa15.21■□□□□ 0.02
CPSF1-212ENST00000616140 CDC37Q16543 378 aaPredicted RBP15.21■□□□□ 0.02
CPSF1-212ENST00000616140 TTBK2Q6IQ55 1244 aa15.21■□□□□ 0.02
CPSF1-212ENST00000616140 DHX36Q9H2U1 1008 aaKnown RBP15.21■□□□□ 0.02
CPSF1-212ENST00000616140 DCP1AQ9NPI6 582 aaPredicted RBP15.21■□□□□ 0.02
CPSF1-212ENST00000616140 WDR19Q8NEZ3 1342 aa15.21■□□□□ 0.02
CPSF1-212ENST00000616140 LRRC7Q96NW7 1537 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 SFI1A8K8P3 1242 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 GSG1L2A8MUP6 293 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 KIF28PB7ZC32 967 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 CAPN9O14815 690 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 STAT2P52630 851 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 HNRNPH2P55795 449 aaKnown RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 TRIM68Q6AZZ1 485 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 CC2D1AQ6P1N0 951 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 PHLDB2Q86SQ0 1253 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 TRIM50Q86XT4 487 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 FMO2Q99518 471 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 ZCCHC17Q9NP64 241 aaKnown RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 KMT5AQ9NQR1 393 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 NOVA2Q9UNW9 492 aaKnown RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 ADGRG1Q9Y653 693 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 TET3O43151 1660 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 ECEL1O95672 775 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 NR1D1P20393 614 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 MUM1Q2TAK8 710 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 EMBQ6PCB8 327 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 CLEC4GQ6UXB4 293 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 UNC13DQ70J99 1090 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 HAUS1Q96CS2 278 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 MINPP1Q9UNW1 487 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 SH3RF3Q8TEJ3 882 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 RIOK1Q9BRS2 568 aaKnown RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 NRBP2Q9NSY0 501 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-212ENST00000616140 PNMA2Q9UL42 364 aa15.2■□□□□ 0.02
CPSF1-212ENST00000616140 DDIT3P35638 169 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 SESN3P58005 492 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 PHLDB3Q6NSJ2 640 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 SGMS1Q86VZ5 419 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 PPP4R1Q8TF05 950 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 WHAMMQ8TF30 809 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 TACC3Q9Y6A5 838 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 TTC26A0AVF1 554 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NBPF26B4DH59 902 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 GOLGA8SH3BPF8 625 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 IL9RQ01113 521 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 LMNB2Q03252 620 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 GRAPQ13588 217 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 ALX1Q15699 326 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 SYDE2Q5VT97 1194 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NBPF10Q6P3W6 841 aaKnown RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NBPF15Q8N660 670 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 CFAP61Q8NHU2 1237 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 GRAPLQ8TC17 118 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NEK9Q8TD19 979 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NUF2Q9BZD4 464 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NACA2Q9H009 215 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 TMEM206Q9H813 350 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 RFX7Q2KHR2 1363 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 ARHGAP31Q2M1Z3 1444 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 CLTCL1P53675 1640 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 PP2D1A8MPX8 630 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 INO80B-WBP1J3KQ70 363 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 SGK1O00141 431 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 HSPA6P17066 643 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 TMC4Q7Z404 712 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 DHX40Q8IX18 779 aaKnown RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 CELF1Q92879 486 aaKnown RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 RAB3IPQ96QF0 476 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 ISCA1Q9BUE6 129 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 INO80BQ9C086 356 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 ALDH8A1Q9H2A2 487 aaPredicted RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 SHROOM2Q13796 1616 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 ADCY10Q96PN6 1610 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 IGBP1P78318 339 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 CTTNQ14247 550 aaKnown RBP15.19■□□□□ 0.02
CPSF1-212ENST00000616140 TXNRD1Q16881 649 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 NCAPG2Q86XI2 1143 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 RNF169Q8NCN4 708 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 MIS12Q9H081 205 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 POLD4Q9HCU8 107 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 SH3GLB2Q9NR46 395 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 TBK1Q9UHD2 729 aa15.19■□□□□ 0.02
CPSF1-212ENST00000616140 CFAP74Q9C0B2 1584 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 PALLDQ8WX93 1383 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 INHBAP08476 426 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 C10orf76Q5T2E6 689 aa15.18■□□□□ 0.02
CPSF1-212ENST00000616140 ALS2CLQ60I27 953 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms