RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 CCDC38Q502W7 563 aa14.44□□□□□ -0.1
MSH6-214ENST00000616033 GKAP1Q5VSY0 366 aaPredicted RBP14.44□□□□□ -0.1
MSH6-214ENST00000616033 SV2BQ7L1I2 683 aa14.44□□□□□ -0.1
MSH6-214ENST00000616033 TRIM51Q9BSJ1 452 aa14.44□□□□□ -0.1
MSH6-214ENST00000616033 TMEM260Q9NX78 707 aa14.44□□□□□ -0.1
MSH6-214ENST00000616033 SAP30BPQ9UHR5 308 aaKnown RBP14.44□□□□□ -0.1
MSH6-214ENST00000616033 ECM29Q5VYK3 1845 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 HMGB1P1B2RPK0 211 aaPredicted RBP14.43□□□□□ -0.1
MSH6-214ENST00000616033 TTI1O43156 1089 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 CALM1P0DP23 149 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 CALM2P0DP24 149 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 CALM3P0DP25 149 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 EPB41P11171 864 aaKnown RBP14.43□□□□□ -0.1
MSH6-214ENST00000616033 DAAM2Q86T65 1068 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 ARFGAP2Q8N6H7 521 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 C4orf32Q8N8J7 132 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 STAMBPL1Q96FJ0 436 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 SPAG5Q96R06 1193 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 ELAC2Q9BQ52 826 aaKnown RBP14.43□□□□□ -0.1
MSH6-214ENST00000616033 YIPF3Q9GZM5 350 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 PCDHA6Q9UN73 950 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 PCDHA8Q9Y5H6 950 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 FAM83BQ5T0W9 1011 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 SUSD4Q5VX71 490 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 CNNM4Q6P4Q7 775 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 KBTBD4Q9NVX7 518 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 MYMKA6NI61 221 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 SART1O43290 800 aaKnown RBP14.43□□□□□ -0.1
MSH6-214ENST00000616033 KIF5BP33176 963 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 MAN2A1Q16706 1144 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 FAM228AQ86W67 206 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 TEX11Q8IYF3 940 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 TAF1DQ9H5J8 278 aaPredicted RBP14.43□□□□□ -0.1
MSH6-214ENST00000616033 MCM8Q9UJA3 840 aa14.43□□□□□ -0.1
MSH6-214ENST00000616033 GOLGB1Q14789 3259 aaKnown RBP14.42□□□□□ -0.1
MSH6-214ENST00000616033 LMTK3Q96Q04 1460 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 MROH5Q6ZUA9 1318 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 ZNF844Q08AG5 666 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 ANKRD20A8PQ5CZ79 823 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 FAXDC2Q96IV6 333 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 ERGIC2Q96RQ1 377 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 TMBIM4Q9HC24 238 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 GDF3Q9NR23 364 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 OR52Z1P0C646 297 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 ABCB4P21439 1286 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 LRRC14Q15048 493 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 ARL6IP4Q66PJ3 421 aaKnown RBP14.42□□□□□ -0.1
MSH6-214ENST00000616033 PDXDC1Q6P996 788 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 CCDC25Q86WR0 208 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 FAM167BQ9BTA0 163 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 SIK3Q9Y2K2 1263 aa14.42□□□□□ -0.1
MSH6-214ENST00000616033 RASSF9O75901 435 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 FGFR2P21802 821 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 EIF6P56537 245 aaKnown RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 KCNB1Q14721 858 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 CDC37Q16543 378 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 PREPLQ4J6C6 727 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 DCAF17Q5H9S7 520 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 CCDC84Q86UT8 332 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 KIF2BQ8N4N8 673 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.41□□□□□ -0.11e-6■■■■■ 44.2
MSH6-214ENST00000616033 KRT18P05783 430 aaKnown RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 PRDX5P30044 214 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 PPP2R2AP63151 447 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 AMPD3Q01432 767 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 UAP1Q16222 522 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 OTUD6AQ7L8S5 288 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 KCNV2Q8TDN2 545 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 DYDC1Q8WWB3 177 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 LBHD1Q9BQE6 289 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 AKAP11Q9UKA4 1901 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 SMCO2A6NFE2 343 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 KLRK1P26718 216 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 TRAPPC10P48553 1259 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 ZNF211Q13398 564 aaPredicted RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 SPATS2Q86XZ4 545 aaKnown RBP14.41□□□□□ -0.1
MSH6-214ENST00000616033 NUDT12Q9BQG2 462 aa14.41□□□□□ -0.1
MSH6-214ENST00000616033 NPHP3-ACAD11A0A0J9YXS1 232 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 ERVV-2B6SEH9 535 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 TLR2O60603 784 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 SOGA3Q5TF21 947 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 USP38Q8NB14 1042 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 TBCKQ8TEA7 893 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 SNX29Q8TEQ0 813 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 WHAMMQ8TF30 809 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 TSG101Q99816 390 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 LUC7LQ9NQ29 371 aaKnown RBP14.4□□□□□ -0.1
MSH6-214ENST00000616033 BCS1LQ9Y276 419 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 BAZ2AQ9UIF9 1905 aaKnown RBP14.4□□□□□ -0.1
MSH6-214ENST00000616033 A0A1B0GUA9 196 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 TSPY3P0CV98 308 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 TSPY8P0CW00 308 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 KRT13P13646 458 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 USP17L2Q6R6M4 530 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 NSMCE1Q8WV22 266 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 PRCCQ92733 491 aaPredicted RBP14.4□□□□□ -0.1
MSH6-214ENST00000616033 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.4□□□□□ -0.1
MSH6-214ENST00000616033 GRID2IPA4D2P6 1211 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 PLTPP55058 493 aa14.4□□□□□ -0.1
MSH6-214ENST00000616033 KCNMA1Q12791 1236 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms