RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	C16orf59	Q7L2K0	433 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	DHX37	Q8IY37	1157 aa	Known RBP	10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	IL27	Q8NEV9	243 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	CCDC12	Q8WUD4	166 aa	Predicted RBP	10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	GTF3C6	Q969F1	213 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	LENG9	Q96B70	501 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	ZFP91	Q96JP5	570 aa	Predicted RBP	10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	CDHR1	Q96JP9	859 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	GPR20	Q99678	358 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	MXRA8	Q9BRK3	442 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	NOC4L	Q9BVI4	516 aa	Known RBP	10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	SLC26A6	Q9BXS9	759 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	TRPV6	Q9H1D0	765 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	KCNH7	Q9NS40	1196 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	NFASC	O94856	1347 aa		10.06	□□□□□ -0.8
SSBP4-208	ENST00000600628	CYP3A7-CYP3A51P	A0A087WV96	503 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	FAM86B1	E9PN63	330 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	SOX1	O00570	391 aa	Predicted RBP	10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	ATG7	O95352	703 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	FAM86B2	P0C5J1	330 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	RAG1	P15918	1043 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	CYP3A7	P24462	503 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	GNA11	P29992	359 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	NEK4	P51957	841 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	EPHB4	P54760	987 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	ARHGAP4	P98171	946 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	SSRP1	Q08945	709 aa	Known RBP	10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	HIC1	Q14526	733 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	GALNT17	Q6IS24	598 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	MFSD5	Q6N075	450 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	CYFIP1	Q7L576	1253 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	REXO1	Q8N1G1	1221 aa	Known RBP	10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	GIMAP8	Q8ND71	665 aa	Predicted RBP	10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	NSUN7	Q8NE18	718 aa	Known RBP	10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	MBOAT7	Q96N66	472 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	AIFM3	Q96NN9	605 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	PHF20	Q9BVI0	1012 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	C6orf50	Q9HD87	102 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	TMEM260	Q9NX78	707 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	RTEL1	Q9NZ71	1219 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	VPS54	Q9P1Q0	977 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	GTF2IRD1	Q9UHL9	959 aa		10.05	□□□□□ -0.8
SSBP4-208	ENST00000600628	IGKV6D-21	A0A0A0MT36	114 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	GSTTP1	A0A1W2PQM5	241 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	PITPNM1	O00562	1244 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	TLR3	O15455	904 aa	Known RBP	10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	PPFIA3	O75145	1194 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	LGR5	O75473	907 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	LGALS2	P05162	132 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	MYL3	P08590	195 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	AR	P10275	920 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	USP11	P51784	963 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	ITGB3BP	Q13352	177 aa	Predicted RBP	10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	TRIM71	Q2Q1W2	868 aa	Known RBP	10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	GPR153	Q6NV75	609 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	NLRX1	Q86UT6	975 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	CCDC148	Q8NFR7	591 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	BICD2	Q8TD16	824 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	TNFRSF25	Q93038	417 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	LRCH3	Q96II8	777 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	PGBD1	Q96JS3	809 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	SPATA33	Q96N06	139 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	WNT8A	Q9H1J5	351 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	EHMT1	Q9H9B1	1298 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	PCDHA4	Q9UN74	947 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	MYH9	P35579	1960 aa	Known RBP	10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	UNC80	Q8N2C7	3258 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	UMODL1	Q5DID0	1318 aa		10.04	□□□□□ -0.8
SSBP4-208	ENST00000600628	SI	P14410	1827 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628		H3BRB1	525 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	SUPT20HL2	P0C7V6	817 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	ZNF286B	P0CG31	522 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	PSEN2	P49810	448 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	STK3	Q13188	491 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	MTMR1	Q13613	665 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	MFSD10	Q14728	455 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	GPNMB	Q14956	572 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	SHH	Q15465	462 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	KIAA0753	Q2KHM9	967 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	JAKMIP3	Q5VZ66	844 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	GDF6	Q6KF10	455 aa	Predicted RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	TRAF7	Q6Q0C0	670 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	B3GNT9	Q6UX72	402 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	TRIM22	Q8IYM9	498 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	RASGRP4	Q8TDF6	673 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	DHX38	Q92620	1227 aa	Known RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	PCYT2	Q99447	389 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	KATNAL1	Q9BW62	490 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	C22orf23	Q9BZE7	217 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	SLK	Q9H2G2	1235 aa	Predicted RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	TUT1	Q9H6E5	874 aa	Known RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	AGO4	Q9HCK5	861 aa	Known RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	TRMT13	Q9NUP7	481 aa	Known RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	PTPRS	Q13332	1948 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	EMSY	Q7Z589	1322 aa		10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	SPTBN5	Q9NRC6	3674 aa	Known RBP	10.03	□□□□□ -0.8
SSBP4-208	ENST00000600628	CPLX1	O14810	134 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	CDKL5	O76039	1030 aa		10.02	□□□□□ -0.81
SSBP4-208	ENST00000600628	CCNE2	O96020	404 aa		10.02	□□□□□ -0.81

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