RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PPTC7Q8NI37 304 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 DIS3LQ8TF46 1054 aaKnown RBP21.95■■□□□ 1.1
UPF1-209ENST00000600310 SPATA33Q96N06 139 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 PKD2L1Q9P0L9 805 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 DDX25Q9UHL0 483 aaKnown RBP21.95■■□□□ 1.1
UPF1-209ENST00000600310 PHF24Q9UPV7 400 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 NFASCO94856 1347 aa21.95■■□□□ 1.1
UPF1-209ENST00000600310 MOXD2PA6NHM9 499 aa21.94■■□□□ 1.1
UPF1-209ENST00000600310 CCNT1O60563 726 aaKnown RBP21.94■■□□□ 1.1
UPF1-209ENST00000600310 COL6A1P12109 1028 aa21.94■■□□□ 1.1
UPF1-209ENST00000600310 NECAB2Q7Z6G3 386 aa21.94■■□□□ 1.1
UPF1-209ENST00000600310 PAWRQ96IZ0 340 aaKnown RBP21.94■■□□□ 1.1
UPF1-209ENST00000600310 ZNF577Q9BSK1 485 aa21.94■■□□□ 1.1
UPF1-209ENST00000600310 CENPFP49454 3210 aa21.94■■□□□ 1.1
UPF1-209ENST00000600310 IPO5O00410 1097 aaKnown RBP21.93■■□□□ 1.1
UPF1-209ENST00000600310 SORBS3O60504 671 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 KPNA6O60684 536 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 ASGR1P07306 291 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 MMP3P08254 477 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 TRAPPC10P48553 1259 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 ACLYP53396 1101 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 ITGB3BPQ13352 177 aaPredicted RBP21.93■■□□□ 1.1
UPF1-209ENST00000600310 HSDL1Q3SXM5 330 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 SDF4Q9BRK5 362 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 C11orf49Q9H6J7 331 aa21.93■■□□□ 1.1
UPF1-209ENST00000600310 VPS37CA5D8V6 355 aaPredicted RBP21.92■■□□□ 1.1
UPF1-209ENST00000600310 WNT7AO00755 349 aa21.92■■□□□ 1.1
UPF1-209ENST00000600310 MSH4O15457 936 aa21.92■■□□□ 1.1
UPF1-209ENST00000600310 DHX15O43143 795 aaKnown RBP21.92■■□□□ 1.1
UPF1-209ENST00000600310 SLC37A4O43826 429 aa21.92■■□□□ 1.1
UPF1-209ENST00000600310 HOXD8P13378 290 aaPredicted RBP21.92■■□□□ 1.1
UPF1-209ENST00000600310 SPRYD3Q8NCJ5 442 aa21.92■■□□□ 1.1
UPF1-209ENST00000600310 JPH1Q9HDC5 661 aaPredicted RBP21.92■■□□□ 1.1
UPF1-209ENST00000600310 TBC1D22BQ9NU19 505 aa21.92■■□□□ 1.1
UPF1-209ENST00000600310 POLR3EQ9NVU0 708 aa21.92■■□□□ 1.1
UPF1-209ENST00000600310 NOL7Q9UMY1 257 aaKnown RBP21.92■■□□□ 1.1
UPF1-209ENST00000600310 PPFIA4O75335 1185 aa21.91■■□□□ 1.1
UPF1-209ENST00000600310 PDIA4P13667 645 aaKnown RBP21.91■■□□□ 1.1
UPF1-209ENST00000600310 DGKDQ16760 1214 aa21.91■■□□□ 1.1
UPF1-209ENST00000600310 ETNPPLQ8TBG4 499 aa21.91■■□□□ 1.1
UPF1-209ENST00000600310 SLC5A5Q92911 643 aa21.91■■□□□ 1.1
UPF1-209ENST00000600310 GPR20Q99678 358 aa21.91■■□□□ 1.1
UPF1-209ENST00000600310 MTMR6Q9Y217 621 aa21.91■■□□□ 1.1
UPF1-209ENST00000600310 A0A1W2PQ45 241 aaPredicted RBP21.9■■□□□ 1.1
UPF1-209ENST00000600310 A0A1W2PQY0 241 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 NOP56O00567 594 aaKnown RBP21.9■■□□□ 1.1
UPF1-209ENST00000600310 STX6O43752 255 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 CABYRO75952 493 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 ATP2B1P20020 1258 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 PURAQ00577 322 aaKnown RBP21.9■■□□□ 1.1
UPF1-209ENST00000600310 CXCL17Q6UXB2 119 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 GLT1D1Q96MS3 346 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 UIMC1Q96RL1 719 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 RIT2Q99578 217 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 SENP6Q9GZR1 1112 aaPredicted RBP21.9■■□□□ 1.1
UPF1-209ENST00000600310 KCNMB3Q9NPA1 279 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 SLC9A2Q9UBY0 812 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 TELO2Q9Y4R8 837 aa21.9■■□□□ 1.1
UPF1-209ENST00000600310 TBX3O15119 743 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 MYL3P08590 195 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 TOB1P50616 345 aaPredicted RBP21.89■■□□□ 1.09
UPF1-209ENST00000600310 SP4Q02446 784 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 ORC2Q13416 577 aaPredicted RBP21.89■■□□□ 1.09
UPF1-209ENST00000600310 TTC38Q5R3I4 469 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 POTEDQ86YR6 584 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 SEPT1Q8WYJ6 367 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 FERMT2Q96AC1 680 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 FAM20AQ96MK3 541 aa21.89■■□□□ 1.09
UPF1-209ENST00000600310 MTG1Q9BT17 334 aaPredicted RBP21.89■■□□□ 1.09
UPF1-209ENST00000600310 ELP1O95163 1332 aa21.88■■□□□ 1.09
UPF1-209ENST00000600310 GSTTP1A0A1W2PQM5 241 aa21.88■■□□□ 1.09
UPF1-209ENST00000600310 PSMD10O75832 226 aa21.88■■□□□ 1.09
UPF1-209ENST00000600310 RILPL1Q5EBL4 403 aa21.88■■□□□ 1.09
UPF1-209ENST00000600310 PRPF38BQ5VTL8 546 aaKnown RBP21.88■■□□□ 1.09
UPF1-209ENST00000600310 BRAPQ7Z569 592 aa21.88■■□□□ 1.09
UPF1-209ENST00000600310 STARD7Q9NQZ5 370 aa21.88■■□□□ 1.09
UPF1-209ENST00000600310 DDX39AO00148 427 aaKnown RBP21.87■■□□□ 1.09
UPF1-209ENST00000600310 NEMFO60524 1076 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 GAS7O60861 476 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 CCNE2O96020 404 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 MCM7P33993 719 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 ACTR2P61160 394 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 KRT76Q01546 638 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 RESTQ13127 1097 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 ZNF174Q15697 407 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 LRCH2Q5VUJ6 765 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 ZNF746Q6NUN9 644 aaPredicted RBP21.87■■□□□ 1.09
UPF1-209ENST00000600310 FERMT3Q86UX7 667 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 HAS1Q92839 578 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 GJA10Q969M2 543 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 TEKT3Q9BXF9 490 aa21.87■■□□□ 1.09
UPF1-209ENST00000600310 ATG7O95352 703 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 TCF7P36402 384 aaPredicted RBP21.86■■□□□ 1.09
UPF1-209ENST00000600310 CALCRLQ16602 461 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 SLC39A5Q6ZMH5 540 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 SLFN12Q8IYM2 578 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 KAT2BQ92831 832 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 VTI1AQ96AJ9 217 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 C16orf70Q9BSU1 422 aa21.86■■□□□ 1.09
UPF1-209ENST00000600310 TCEAL9Q9UHQ7 104 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms