RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 OXER1Q8TDS5 423 aa17.34■□□□□ 0.37
LIG1-219ENST00000600055 WASF1Q92558 559 aa17.34■□□□□ 0.37
LIG1-219ENST00000600055 CDHR1Q96JP9 859 aa17.34■□□□□ 0.37
LIG1-219ENST00000600055 TOX2Q96NM4 488 aa17.34■□□□□ 0.37
LIG1-219ENST00000600055 UIMC1Q96RL1 719 aa17.34■□□□□ 0.37
LIG1-219ENST00000600055 DCDC2CA8MYV0 355 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 MAFGO15525 162 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 HOXD8P13378 290 aaPredicted RBP17.33■□□□□ 0.36
LIG1-219ENST00000600055 XBP1P17861 261 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 GALNT17Q6IS24 598 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 CHRDL2Q6WN34 429 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 PLA2G4DQ86XP0 818 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 FAM177A1Q8N128 213 aaPredicted RBP17.33■□□□□ 0.36
LIG1-219ENST00000600055 TBCKQ8TEA7 893 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 GPR20Q99678 358 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 TRPV6Q9H1D0 765 aa17.33■□□□□ 0.36
LIG1-219ENST00000600055 AGO4Q9HCK5 861 aaKnown RBP17.33■□□□□ 0.36
LIG1-219ENST00000600055 MROH7Q68CQ1 1323 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 IGLV3-22A0A075B6J6 115 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 NOP56O00567 594 aaKnown RBP17.32■□□□□ 0.36
LIG1-219ENST00000600055 B4GALT4O60513 344 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 PPFIA4O75335 1185 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 CD4P01730 458 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 ITGB8P26012 769 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 MAGEA10P43363 369 aaPredicted RBP17.32■□□□□ 0.36
LIG1-219ENST00000600055 MDM2Q00987 491 aaPredicted RBP17.32■□□□□ 0.36
LIG1-219ENST00000600055 ITGB3BPQ13352 177 aaPredicted RBP17.32■□□□□ 0.36
LIG1-219ENST00000600055 FAM47CQ5HY64 1035 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 LLPHQ9BRT6 129 aaKnown RBP17.32■□□□□ 0.36
LIG1-219ENST00000600055 C16orf70Q9BSU1 422 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 TMEM39AQ9NV64 488 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 PRKAG2Q9UGJ0 569 aa17.32■□□□□ 0.36
LIG1-219ENST00000600055 F2P00734 622 aa17.31■□□□□ 0.36
LIG1-219ENST00000600055 LGALS2P05162 132 aa17.31■□□□□ 0.36
LIG1-219ENST00000600055 CIITAP33076 1130 aa17.31■□□□□ 0.36
LIG1-219ENST00000600055 PSEN2P49810 448 aa17.31■□□□□ 0.36
LIG1-219ENST00000600055 UTP14CQ5TAP6 766 aaKnown RBP17.31■□□□□ 0.36
LIG1-219ENST00000600055 NIPA1Q7RTP0 329 aa17.31■□□□□ 0.36
LIG1-219ENST00000600055 GIMAP8Q8ND71 665 aaPredicted RBP17.31■□□□□ 0.36
LIG1-219ENST00000600055 TMX3Q96JJ7 454 aa17.31■□□□□ 0.36
LIG1-219ENST00000600055 TRMT13Q9NUP7 481 aaKnown RBP17.31■□□□□ 0.36
LIG1-219ENST00000600055 COLQQ9Y215 455 aaPredicted RBP17.31■□□□□ 0.36
LIG1-219ENST00000600055 MYH7BA7E2Y1 1941 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 GSTTP1A0A1W2PQM5 241 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 HAS3O00219 553 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 KIAA0355O15063 1070 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 TLR3O15455 904 aaKnown RBP17.3■□□□□ 0.36
LIG1-219ENST00000600055 GUCY1B3Q02153 619 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 NR5A1Q13285 461 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 MFSD10Q14728 455 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 NONOQ15233 471 aaKnown RBP eCLIP17.3■□□□□ 0.36
LIG1-219ENST00000600055 INF2Q27J81 1249 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 KIAA0753Q2KHM9 967 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 PRR16Q569H4 304 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 EARS2Q5JPH6 523 aaKnown RBP17.3■□□□□ 0.36
LIG1-219ENST00000600055 KRT40Q6A162 431 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 NFRKBQ6P4R8 1299 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 KRT25Q7Z3Z0 450 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 TRIM50Q86XT4 487 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 LENG9Q96B70 501 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 GDF15Q99988 308 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 TBX21Q9UL17 535 aa17.3■□□□□ 0.36
LIG1-219ENST00000600055 DOCK5Q9H7D0 1870 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 FAM205CA6NFA0 338 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 DDX39AO00148 427 aaKnown RBP17.29■□□□□ 0.36
LIG1-219ENST00000600055 KRT2P35908 639 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 USP11P51784 963 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 PIK3AP1Q6ZUJ8 805 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 SEPT1Q8WYJ6 367 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 BADQ92934 168 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 SDF4Q9BRK5 362 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 SEZ6LQ9BYH1 1024 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 JPH1Q9HDC5 661 aaPredicted RBP17.29■□□□□ 0.36
LIG1-219ENST00000600055 HDAC6Q9UBN7 1215 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 SLC9A2Q9UBY0 812 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 SCN10AQ9Y5Y9 1956 aa17.29■□□□□ 0.36
LIG1-219ENST00000600055 NFASCO94856 1347 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 CCDC194A0A1B0GVG4 234 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 BTBD18B2RXH4 712 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 H3BRB1 525 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 DHX15O43143 795 aaKnown RBP17.28■□□□□ 0.36
LIG1-219ENST00000600055 TDP2O95551 362 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 MMP1P03956 469 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 CYP2C9P11712 490 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 RAG1P15918 1043 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 TCF7P36402 384 aaPredicted RBP17.28■□□□□ 0.36
LIG1-219ENST00000600055 HMGN5P82970 282 aaKnown RBP17.28■□□□□ 0.36
LIG1-219ENST00000600055 TRIM29Q14134 588 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 GDF6Q6KF10 455 aaPredicted RBP17.28■□□□□ 0.36
LIG1-219ENST00000600055 IL27Q8NEV9 243 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 TNFRSF25Q93038 417 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 LBHD1Q9BQE6 289 aaPredicted RBP17.28■□□□□ 0.36
LIG1-219ENST00000600055 ZNF577Q9BSK1 485 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 KATNAL1Q9BW62 490 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 PPP1R12CQ9BZL4 782 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 PRO3102Q9H379 93 aa17.28■□□□□ 0.36
LIG1-219ENST00000600055 TUT1Q9H6E5 874 aaKnown RBP17.28■□□□□ 0.36
LIG1-219ENST00000600055 UMODL1Q5DID0 1318 aa17.27■□□□□ 0.36
LIG1-219ENST00000600055 IPO5O00410 1097 aaKnown RBP17.27■□□□□ 0.36
LIG1-219ENST00000600055 MSH4O15457 936 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms