RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 UIMC1Q96RL1 719 aa15.4■□□□□ 0.06
VMP1-210ENST00000589823 RIT2Q99578 217 aa15.4■□□□□ 0.06
VMP1-210ENST00000589823 TEKT3Q9BXF9 490 aa15.4■□□□□ 0.06
VMP1-210ENST00000589823 CFAP45Q9UL16 551 aa15.4■□□□□ 0.06
VMP1-210ENST00000589823 GNEQ9Y223 722 aaKnown RBP15.4■□□□□ 0.06
VMP1-210ENST00000589823 DYNC1LI2O43237 492 aaPredicted RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 ADCY6O43306 1168 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 SORBS3O60504 671 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 GAS7O60861 476 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 NCLP19338 710 aaKnown RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 CEBPZQ03701 1054 aaKnown RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 ITGB3BPQ13352 177 aaPredicted RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 TMEM63BQ5T3F8 832 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 METTL7BQ6UX53 244 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 HAS1Q92839 578 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 LENG1Q96BZ8 264 aaPredicted RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 USP28Q96RU2 1077 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 TMEM60Q9H2L4 133 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 JPH1Q9HDC5 661 aaPredicted RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 XPNPEP3Q9NQH7 507 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 POLR3EQ9NVU0 708 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 TFIP11Q9UBB9 837 aaKnown RBP15.39■□□□□ 0.05
VMP1-210ENST00000589823 CLIC4Q9Y696 253 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 HTTP42858 3142 aa15.39■□□□□ 0.05
VMP1-210ENST00000589823 DDX39AO00148 427 aaKnown RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 NOP56O00567 594 aaKnown RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 FARP2O94887 1054 aaPredicted RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 TXKP42681 527 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 KRT85P78386 507 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 ATP2C1P98194 919 aaPredicted RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 KRT76Q01546 638 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 SP4Q02446 784 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 DNM1Q05193 864 aaKnown RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 ARHGAP1Q07960 439 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 STK38Q15208 465 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 TMEM266Q2M3C6 531 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 BRDTQ58F21 947 aaPredicted RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 EMID1Q96A84 441 aaPredicted RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 SPATA33Q96N06 139 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 MTMR9Q96QG7 549 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 FTOQ9C0B1 505 aaKnown RBP eCLIP15.38■□□□□ 0.05
VMP1-210ENST00000589823 PAK6Q9NQU5 681 aaPredicted RBP15.38■□□□□ 0.05
VMP1-210ENST00000589823 SLC9A2Q9UBY0 812 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 PCDHA12Q9UN75 941 aa15.38■□□□□ 0.05
VMP1-210ENST00000589823 DHX15O43143 795 aaKnown RBP15.37■□□□□ 0.05
VMP1-210ENST00000589823 PSMD10O75832 226 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 PTGS1P23219 599 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 PRPHP41219 470 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 NASPP49321 788 aaPredicted RBP15.37■□□□□ 0.05
VMP1-210ENST00000589823 GJA9P57773 515 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 ARL6IP4Q66PJ3 421 aaKnown RBP15.37■□□□□ 0.05
VMP1-210ENST00000589823 LHX8Q68G74 356 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 DTHD1Q6ZMT9 781 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 C4orf32Q8N8J7 132 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 PPTC7Q8NI37 304 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 GJA10Q969M2 543 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 DEFB118Q96PH6 123 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 TMEM106CQ9BVX2 250 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 BCAS3Q9H6U6 928 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 TTC12Q9H892 705 aaPredicted RBP15.37■□□□□ 0.05
VMP1-210ENST00000589823 SYNRGQ9UMZ2 1314 aa15.37■□□□□ 0.05
VMP1-210ENST00000589823 ZEB2O60315 1214 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 YEATS4O95619 227 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 PGK1P00558 417 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 MYCNP04198 464 aaPredicted RBP15.36■□□□□ 0.05
VMP1-210ENST00000589823 GJB1P08034 283 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 C6orf222P0C671 652 aaPredicted RBP15.36■□□□□ 0.05
VMP1-210ENST00000589823 CPT1AP50416 773 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 SLC39A14Q15043 492 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 PTPAQ15257 358 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 COL13A1Q5TAT6 717 aaPredicted RBP15.36■□□□□ 0.05
VMP1-210ENST00000589823 ZNF746Q6NUN9 644 aaPredicted RBP15.36■□□□□ 0.05
VMP1-210ENST00000589823 RNF180Q86T96 592 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 AFG1LQ8WV93 481 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 RAB34Q9BZG1 259 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 UPF3AQ9H1J1 476 aaKnown RBP15.36■□□□□ 0.05
VMP1-210ENST00000589823 ELP1O95163 1332 aa15.36■□□□□ 0.05
VMP1-210ENST00000589823 MYH15Q9Y2K3 1946 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 WDR64B1ANS9 1081 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 CHMP2AO43633 222 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 TECP42680 631 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 JAK3P52333 1124 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 ACTR2P61160 394 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 PPP2R5CQ13362 524 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 FSCN1Q16658 493 aaKnown RBP15.35■□□□□ 0.05
VMP1-210ENST00000589823 HSDL1Q3SXM5 330 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 NCAPH2Q6IBW4 605 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 MIER3Q7Z3K6 550 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 SMAP1Q8IYB5 467 aaPredicted RBP15.35■□□□□ 0.05
VMP1-210ENST00000589823 LINC00301Q8NCQ3 95 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 ARRDC4Q8NCT1 418 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 KCNG4Q8TDN1 519 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 SEPT1Q8WYJ6 367 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 UNC45AQ9H3U1 944 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 SAMM50Q9Y512 469 aa15.35■□□□□ 0.05
VMP1-210ENST00000589823 A6NJR5 290 aa15.34■□□□□ 0.05
VMP1-210ENST00000589823 SPTLC2O15270 562 aa15.34■□□□□ 0.05
VMP1-210ENST00000589823 ADAMTS4O75173 837 aa15.34■□□□□ 0.05
VMP1-210ENST00000589823 SGPL1O95470 568 aa15.34■□□□□ 0.05
VMP1-210ENST00000589823 TFRCP02786 760 aaKnown RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms