RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 FERMT3Q86UX7 667 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 DDX1Q92499 740 aaKnown RBP6.58□□□□□ -1.36
VMP1-205ENST00000587470 OSBP2Q969R2 916 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 BDH2Q9BUT1 245 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 SLC6A20Q9NP91 592 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 FANCD2Q9BXW9 1451 aa6.58□□□□□ -1.36
VMP1-205ENST00000587470 TRAV20A0A0B4J274 112 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 U2SURPO15042 1029 aaKnown RBP6.57□□□□□ -1.36
VMP1-205ENST00000587470 RGL3Q3MIN7 710 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 FAM26FQ5R3K3 315 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 PRR31Q5SQ13 230 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 TEPPQ6URK8 271 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 TRIM48Q8IWZ4 208 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 ZFYVE21Q9BQ24 234 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 JAM3Q9BX67 310 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 MYOTQ9UBF9 498 aa6.57□□□□□ -1.36
VMP1-205ENST00000587470 LRG1P02750 347 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 CNR2P34972 360 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 IFRD2Q12894 506 aaPredicted RBP6.56□□□□□ -1.36
VMP1-205ENST00000587470 ADAM9Q13443 819 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 LBX2Q6XYB7 198 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 DPH6Q7L8W6 267 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 PRRT2Q7Z6L0 340 aaPredicted RBP6.56□□□□□ -1.36
VMP1-205ENST00000587470 PODXL2Q9NZ53 605 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 ASH2LQ9UBL3 628 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 PPP1R1BQ9UD71 204 aaPredicted RBP6.56□□□□□ -1.36
VMP1-205ENST00000587470 CNOT11Q9UKZ1 510 aaKnown RBP6.56□□□□□ -1.36
VMP1-205ENST00000587470 MSRB2Q9Y3D2 182 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 DUSP10Q9Y6W6 482 aa6.56□□□□□ -1.36
VMP1-205ENST00000587470 DDX3XO00571 662 aaKnown RBP eCLIP6.55□□□□□ -1.36
VMP1-205ENST00000587470 CYP7B1O75881 506 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 ATP2B1P20020 1258 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 GPR85P60893 370 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 EFEMP1Q12805 493 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 NTRK3Q16288 839 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 KIZQ2M2Z5 673 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 NBPF6Q5VWK0 638 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 MCTP2Q6DN12 878 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 STYK1Q6J9G0 422 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 KCNT2Q6UVM3 1135 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 FAM124AQ86V42 546 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 IFNL3Q8IZI9 196 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 PIP4K2CQ8TBX8 421 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 FBXO41Q8TF61 875 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 NBPF4Q96M43 638 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 HSPBP1Q9NZL4 362 aa6.55□□□□□ -1.36
VMP1-205ENST00000587470 MROH6A6NGR9 719 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 PDPK1O15530 556 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 GRK2P25098 689 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 GRK3P35626 688 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 SPIRE1Q08AE8 756 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 YOD1Q5VVQ6 348 aaPredicted RBP6.54□□□□□ -1.36
VMP1-205ENST00000587470 PRAMEF18Q5VWM3 479 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 DBX2Q6ZNG2 339 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 OTOP3Q7RTS5 596 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 TXNDC5Q8NBS9 432 aaKnown RBP6.54□□□□□ -1.36
VMP1-205ENST00000587470 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.54□□□□□ -1.36
VMP1-205ENST00000587470 CLIC6Q96NY7 704 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 SPATA9Q9BWV2 254 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 CCDC113Q9H0I3 377 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 PPARGC1AQ9UBK2 798 aaKnown RBP6.54□□□□□ -1.36
VMP1-205ENST00000587470 NUB1Q9Y5A7 615 aa6.54□□□□□ -1.36
VMP1-205ENST00000587470 SLC27A2O14975 620 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 RASGRF1Q13972 1273 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 SCUBE1Q8IWY4 988 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 LGI4Q8N135 537 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 TTLL11Q8NHH1 800 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 LCORQ96JN0 433 aaPredicted RBP6.53□□□□□ -1.36
VMP1-205ENST00000587470 WRNIP1Q96S55 665 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 TMEM209Q96SK2 561 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 TANGO6Q9C0B7 1094 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 URB2Q14146 1524 aaKnown RBP6.53□□□□□ -1.36
VMP1-205ENST00000587470 ZNF608Q9ULD9 1512 aaPredicted RBP6.53□□□□□ -1.36
VMP1-205ENST00000587470 IFT140Q96RY7 1462 aa6.53□□□□□ -1.36
VMP1-205ENST00000587470 BLACEA4D250 179 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 C9orf118A6NHY6 69 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 K7ESM1 405 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 GNAT1P11488 350 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 ZNF28P17035 718 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 IL13P35225 146 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 SPATS1Q496A3 300 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 MTERF2Q49AM1 385 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 BORAQ6PGQ7 559 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 SPATC1Q76KD6 591 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 CLEC4DQ8WXI8 215 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 KCNJ15Q99712 375 aa6.52□□□□□ -1.37
VMP1-205ENST00000587470 PDGFDQ9GZP0 370 aaPredicted RBP6.52□□□□□ -1.37
VMP1-205ENST00000587470 TOP2AP11388 1531 aaKnown RBP6.51□□□□□ -1.37
VMP1-205ENST00000587470 SOD2P04179 222 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 CYP1A1P04798 512 aaPredicted RBP6.51□□□□□ -1.37
VMP1-205ENST00000587470 ITGB3P05106 788 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 ADRB1P08588 477 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 COL6A2P12110 1019 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 HABP4Q5JVS0 413 aaKnown RBP6.51□□□□□ -1.37
VMP1-205ENST00000587470 UHMK1Q8TAS1 419 aaKnown RBP6.51□□□□□ -1.37
VMP1-205ENST00000587470 ZSWIM3Q96MP5 696 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 C8orf37Q96NL8 207 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 IPO9Q96P70 1041 aaKnown RBP6.51□□□□□ -1.37
VMP1-205ENST00000587470 ALG1Q9BT22 464 aa6.51□□□□□ -1.37
VMP1-205ENST00000587470 L2HGDHQ9H9P8 463 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms