RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 RNF214Q8ND24 703 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 LARP4BQ92615 738 aaKnown RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 TRIM44Q96DX7 344 aaPredicted RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 EPSTI1Q96J88 318 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 GSDMAQ96QA5 445 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 IWS1Q96ST2 819 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 MXRA8Q9BRK3 442 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 PANK2Q9BZ23 570 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 TMEM60Q9H2L4 133 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 MROH8Q9H579 483 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 KCNMB3Q9NPA1 279 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 PXMP2Q9NR77 195 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 TBC1D22BQ9NU19 505 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 EXOC1Q9NV70 894 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 SLC5A4Q9NY91 659 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 ABT1Q9ULW3 272 aaKnown RBP6.94□□□□□ -1.3
LIG3-206ENST00000586058 ADAMTS5Q9UNA0 930 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 SAMM50Q9Y512 469 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 MRVI1Q9Y6F6 885 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 FRMPD4Q14CM0 1322 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 RPTORQ8N122 1335 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 ZSWIM8A7E2V4 1837 aa6.94□□□□□ -1.3
LIG3-206ENST00000586058 LOC102724159A0A0B4J2E5 919 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 PDHXO00330 501 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 IPO5O00410 1097 aaKnown RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 KIF3CO14782 793 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 OPLAHO14841 1288 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 ADAMTS3O15072 1205 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 MAFGO15525 162 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 CHMP2AO43633 222 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 ACTN4O43707 911 aaKnown RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 GTPBP6O43824 516 aaPredicted RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 ECM2O94769 699 aaPredicted RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 KIF20AO95235 890 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 SSBP05455 408 aaKnown RBP eCLIP6.93□□□□□ -1.3
LIG3-206ENST00000586058 TPM3P06753 285 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 FCER1AP12319 257 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 TAL1P17542 331 aaPredicted RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 PLCG1P19174 1290 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 MUTP22033 750 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 SFNP31947 248 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 JAK3P52333 1124 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 INHBEP58166 350 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 ASIC1P78348 528 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 KRT76Q01546 638 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 GRIN1Q05586 938 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 CCDC173Q0VFZ6 552 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 PWP2Q15269 919 aaKnown RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 STXBP2Q15833 593 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 LONRF3Q496Y0 759 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 ARSIQ5FYB1 569 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 DLK2Q6UY11 383 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 MIER3Q7Z3K6 550 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 C4orf32Q8N8J7 132 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 GIMAP8Q8ND71 665 aaPredicted RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 SHCBP1Q8NEM2 672 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 ANKRD20A12PQ8NF67 263 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 REPS2Q8NFH8 660 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 GPRC5AQ8NFJ5 357 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 SYTL5Q8TDW5 730 aaPredicted RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 CLEC4DQ8WXI8 215 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 GPRASP2Q96D09 838 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 MBOAT7Q96N66 472 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 MTMR9Q96QG7 549 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 MMP19Q99542 508 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 RIT2Q99578 217 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 DNAJC25Q9H1X3 360 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 ZCCHC17Q9NP64 241 aaKnown RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 A1CFQ9NQ94 594 aaKnown RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 CYP39A1Q9NYL5 469 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 GOLGB1Q14789 3259 aaKnown RBP6.93□□□□□ -1.3
LIG3-206ENST00000586058 SYNRGQ9UMZ2 1314 aa6.93□□□□□ -1.3
LIG3-206ENST00000586058 FSD2A1L4K1 749 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 FAM86B1E9PN63 330 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 BIN1O00499 593 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 MSH4O15457 936 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 TBCAO75347 108 aaKnown RBP6.92□□□□□ -1.3
LIG3-206ENST00000586058 FAM86B2P0C5J1 330 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 ERCC3P19447 782 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 ALDH5A1P51649 535 aaPredicted RBP6.92□□□□□ -1.3
LIG3-206ENST00000586058 ERVK-9P63128 1117 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 ERVK-24P63145 666 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 PPP2R5CQ13362 524 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 BAATQ14032 418 aaPredicted RBP6.92□□□□□ -1.3
LIG3-206ENST00000586058 CT47A1Q5JQC4 288 aaPredicted RBP6.92□□□□□ -1.3
LIG3-206ENST00000586058 SPRYD7Q5W111 196 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 RGMBQ6NW40 437 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 CNNM4Q6P4Q7 775 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 KCNV1Q6PIU1 500 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 MLKLQ8NB16 471 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 ETNPPLQ8TBG4 499 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 CRYGNQ8WXF5 182 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 KHSRPQ92945 711 aaKnown RBP eCLIP6.92□□□□□ -1.3
LIG3-206ENST00000586058 CCDC102AQ96A19 550 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 PAGE5Q96GU1 130 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 TAAR1Q96RJ0 339 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 P2RX7Q99572 595 aaKnown RBP6.92□□□□□ -1.3
LIG3-206ENST00000586058 BPIFA3Q9BQP9 254 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 PDCD2LQ9BRP1 358 aa6.92□□□□□ -1.3
LIG3-206ENST00000586058 TUFT1Q9NNX1 390 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms