RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CCDC51Q96ER9 411 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 PANX2Q96RD6 677 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 TSG101Q99816 390 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 DUSP9Q99956 384 aaKnown RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 EIF2AK1Q9BQI3 630 aaKnown RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 ZNF577Q9BSK1 485 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 SLC39A2Q9NP94 309 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 ADAMTS5Q9UNA0 930 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 SSC5DA1L4H1 1573 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 POTEFA5A3E0 1075 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 AKR1B15C9JRZ8 316 aaPredicted RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 KIF2AO00139 706 aaPredicted RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 TEX33O43247 280 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 STX10O60499 249 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 DDNO94850 711 aaPredicted RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 EYA4O95677 639 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 KRT18P05783 430 aaKnown RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 POTEIP0CG38 1075 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 PMS1P54277 932 aaKnown RBP15.79■□□□□ 0.12
LIG3-205ENST00000585941 COG2Q14746 738 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 TKFCQ3LXA3 575 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 ANKRD40Q6AI12 368 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 XRRA1Q6P2D8 792 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 POTEGQ6S5H5 508 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 POTEEQ6S8J3 1075 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 SULF1Q8IWU6 871 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 MYOCDQ8IZQ8 938 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 PRIMPOLQ96LW4 560 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 SYT17Q9BSW7 474 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 TEKT3Q9BXF9 490 aa15.79■□□□□ 0.12
LIG3-205ENST00000585941 A0A1W2PQC6 194 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 FRMD3A2A2Y4 597 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 LGALS16A8MUM7 142 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 ATP2A1O14983 1001 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 ARHGAP6O43182 974 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 TUBB4AP04350 444 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 DSG3P32926 999 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 HMGCS2P54868 508 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 SH3D19Q5HYK7 790 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 PRAMEF18Q5VWM3 479 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 CNGA4Q8IV77 575 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 CCAR2Q8N163 923 aaKnown RBP15.78■□□□□ 0.12
LIG3-205ENST00000585941 SYTL5Q8TDW5 730 aaPredicted RBP15.78■□□□□ 0.12
LIG3-205ENST00000585941 TRERF1Q96PN7 1200 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 UIMC1Q96RL1 719 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 HSD17B14Q9BPX1 270 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 NAA15Q9BXJ9 866 aaKnown RBP15.78■□□□□ 0.12
LIG3-205ENST00000585941 VPS16Q9H269 839 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 HOXC10Q9NYD6 342 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 AFG3L2Q9Y4W6 797 aa15.78■□□□□ 0.12
LIG3-205ENST00000585941 COL11A1P12107 1806 aaPredicted RBP15.77■□□□□ 0.12
LIG3-205ENST00000585941 IPO5O00410 1097 aaKnown RBP15.77■□□□□ 0.12
LIG3-205ENST00000585941 PPP1R12BO60237 982 aaPredicted RBP15.77■□□□□ 0.12
LIG3-205ENST00000585941 COBLO75128 1261 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 USP2O75604 605 aaPredicted RBP15.77■□□□□ 0.12
LIG3-205ENST00000585941 DNM2P50570 870 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 MAP3K9P80192 1104 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 EPHA7Q15375 998 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 RNF207Q6ZRF8 634 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 CATSPERGQ6ZRH7 1159 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 TC2NQ8N9U0 490 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 ATG4CQ96DT6 458 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 BAG1Q99933 345 aaPredicted RBP15.77■□□□□ 0.12
LIG3-205ENST00000585941 SEMA6BQ9H3T3 888 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 TAB2Q9NYJ8 693 aa15.77■□□□□ 0.12
LIG3-205ENST00000585941 R3HCC1Q9Y3T6 440 aaKnown RBP15.77■□□□□ 0.12
LIG3-205ENST00000585941 EML1O00423 815 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 RPS6P62753 249 aaKnown RBP15.76■□□□□ 0.11
LIG3-205ENST00000585941 UBXN2AP68543 259 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 DGKZQ13574 1117 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 MUM1L1Q5H9M0 696 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 DPY19L2Q6NUT2 758 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 JADE2Q9NQC1 790 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 KCND2Q9NZV8 630 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 COL20A1Q9P218 1284 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 UBIAD1Q9Y5Z9 338 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 CSADQ9Y600 493 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 WDR90Q96KV7 1748 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 UBXN1Q04323 297 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 PABPC4Q13310 644 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIG3-205ENST00000585941 ARSHQ5FYA8 562 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 HERC4Q5GLZ8 1057 aaPredicted RBP15.76■□□□□ 0.11
LIG3-205ENST00000585941 B3GNT9Q6UX72 402 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 CREBRFQ8IUR6 639 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 REPS2Q8NFH8 660 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 HPS3Q969F9 1004 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 IQCDQ96DY2 449 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 CNOT6LQ96LI5 555 aaKnown RBP15.76■□□□□ 0.11
LIG3-205ENST00000585941 NACC1Q96RE7 527 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 TUBGCP2Q9BSJ2 902 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 HOMER2Q9NSB8 354 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 RNF146Q9NTX7 359 aa15.76■□□□□ 0.11
LIG3-205ENST00000585941 ZSCAN12O43309 604 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 SLITRK3O94933 977 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 ARP10275 920 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 GAP43P17677 238 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 ITGB5P18084 799 aa15.75■□□□□ 0.11
LIG3-205ENST00000585941 MTIF2P46199 727 aaKnown RBP15.75■□□□□ 0.11
LIG3-205ENST00000585941 IREB2P48200 963 aaKnown RBP15.75■□□□□ 0.11
LIG3-205ENST00000585941 CYP4A11Q02928 519 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms