RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	FAXDC2	Q96IV6	333 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	FAM84A	Q96KN4	292 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	LRGUK	Q96M69	825 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	SLC38A3	Q99624	504 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	MENT	Q9BUN1	341 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	SARG	Q9BW04	601 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	SLC12A5	Q9H2X9	1139 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	PTPRH	Q9HD43	1115 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	ANLN	Q9NQW6	1124 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	THG1L	Q9NWX6	298 aa	Known RBP	6.2	□□□□□ -1.42
SS18-223	ENST00000583595	TERF2IP	Q9NYB0	399 aa		6.2	□□□□□ -1.42
SS18-223	ENST00000583595	AQP7	O14520	342 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	APAF1	O14727	1248 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	CP	P00450	1065 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	HPX	P02790	462 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	SCG5	P05408	212 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	SRGAP2C	P0DJJ0	459 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	RNF4	P78317	190 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	PURA	Q00577	322 aa	Known RBP	6.19	□□□□□ -1.42
SS18-223	ENST00000583595	DSG1	Q02413	1049 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	SNW1	Q13573	536 aa	Known RBP	6.19	□□□□□ -1.42
SS18-223	ENST00000583595	GRM3	Q14832	879 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	NBPF9	Q3BBW0	867 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	ARHGAP29	Q52LW3	1261 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	PGM2L1	Q6PCE3	622 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	EPM2AIP1	Q7L775	607 aa	Predicted RBP	6.19	□□□□□ -1.42
SS18-223	ENST00000583595	ANKLE2	Q86XL3	938 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	SPICE1	Q8N0Z3	855 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	FIBCD1	Q8N539	461 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	CLIP3	Q96DZ5	547 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	ZDHHC15	Q96MV8	337 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	PRDM14	Q9GZV8	571 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	ASCC2	Q9H1I8	757 aa	Predicted RBP	6.19	□□□□□ -1.42
SS18-223	ENST00000583595	TCF7L1	Q9HCS4	588 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	EMC7	Q9NPA0	242 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	GPRC5C	Q9NQ84	441 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	DDX20	Q9UHI6	824 aa	Known RBP	6.19	□□□□□ -1.42
SS18-223	ENST00000583595	FAM50B	Q9Y247	325 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	COQ6	Q9Y2Z9	468 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHB12	Q9Y5F1	795 aa		6.19	□□□□□ -1.42
SS18-223	ENST00000583595	GAS7	O60861	476 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	CKM	P06732	381 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	ZGLP1	P0C6A0	271 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	ATP2A2	P16615	1042 aa	Known RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	SERPINB3	P29508	390 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	TRHR	P34981	398 aa	Predicted RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	JAG1	P78504	1218 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	NMI	Q13287	307 aa	Predicted RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	MTDH	Q86UE4	582 aa	Known RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	SKAP1	Q86WV1	359 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	CMIP	Q8IY22	773 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	SYTL5	Q8TDW5	730 aa	Predicted RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	UBE2Q2	Q8WVN8	375 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	AHCYL2	Q96HN2	611 aa	Known RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	SLC13A1	Q9BZW2	595 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	PRDM11	Q9NQV5	511 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	TMEFF2	Q9UIK5	374 aa	Predicted RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595	MINPP1	Q9UNW1	487 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	ZKSCAN5	Q9Y2L8	839 aa		6.18	□□□□□ -1.42
SS18-223	ENST00000583595	ARID1B	Q8NFD5	2236 aa	Predicted RBP	6.18	□□□□□ -1.42
SS18-223	ENST00000583595		K7ESF4	209 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA12	O60330	932 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	MSC	O60682	206 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	FGA	P02671	866 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	LTF	P02788	710 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	SOD2	P04179	222 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	LPO	P22079	712 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	CYP2C19	P33261	490 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	RECQL	P46063	649 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	AMPD2	Q01433	879 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	SCRN1	Q12765	414 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	KLF1	Q13351	362 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PICALM	Q13492	652 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	SPTY2D1	Q68D10	685 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PNMA8A	Q86V59	439 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	MORC1	Q86VD1	984 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	ZC3H7A	Q8IWR0	971 aa	Known RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	IFNL3	Q8IZI9	196 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PDZD8	Q8NEN9	1154 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	C1orf162	Q8NEQ5	155 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	ENOX1	Q8TC92	643 aa	Known RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	FBXO41	Q8TF61	875 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	SYTL4	Q96C24	671 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	DIRC2	Q96SL1	478 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	MCMBP	Q9BTE3	642 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	C19orf44	Q9H6X5	657 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	C14orf119	Q9NWQ9	140 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	GFOD1	Q9NXC2	390 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	H2AFY2	Q9P0M6	372 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	RCAN3	Q9UKA8	241 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PNMA8B	Q9ULN7	279 aa	Predicted RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA9	Q9Y5G4	932 aa	Known RBP	6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA8	Q9Y5G5	932 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA7	Q9Y5G6	932 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA6	Q9Y5G7	932 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA3	Q9Y5H0	932 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	PCDHGA2	Q9Y5H1	932 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	FHOD1	Q9Y613	1164 aa		6.17	□□□□□ -1.42
SS18-223	ENST00000583595	FRMPD2	Q68DX3	1309 aa	Predicted RBP	6.17	□□□□□ -1.42

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