RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HIC1Q14526 733 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 ZNF618Q5T7W0 954 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 TMTC3Q6ZXV5 915 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 SGMS1Q86VZ5 419 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 CCDC136Q96JN2 1154 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 USP26Q9BXU7 913 aa23.57■■□□□ 1.36
SHMT1-209ENST00000582653 TUT1Q9H6E5 874 aaKnown RBP23.57■■□□□ 1.36
SHMT1-209ENST00000582653 TET1Q8NFU7 2136 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 ABHD14A-ACY1A0A1B0GW23 586 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 WDR5P61964 334 aaKnown RBP23.56■■□□□ 1.36
SHMT1-209ENST00000582653 TAP1Q03518 808 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 SEMA3FQ13275 785 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 XRRA1Q6P2D8 792 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 TRAF7Q6Q0C0 670 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 BRPF3Q9ULD4 1205 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 TANC1Q9C0D5 1861 aa23.56■■□□□ 1.36
SHMT1-209ENST00000582653 FIBPO43427 364 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 IKBKEQ14164 716 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 PCNX4Q63HM2 1172 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 APOA5Q6Q788 366 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 METTL7BQ6UX53 244 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 SYNE3Q6ZMZ3 975 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 CYFIP1Q7L576 1253 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 DHX32Q7L7V1 743 aaKnown RBP23.55■■□□□ 1.36
SHMT1-209ENST00000582653 SERINC5Q86VE9 423 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 WNT8BQ93098 351 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 ASB2Q96Q27 587 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 SENP7Q9BQF6 1050 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 PSTPIP2Q9H939 334 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 THEGQ9P2T0 379 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 TELO2Q9Y4R8 837 aa23.55■■□□□ 1.36
SHMT1-209ENST00000582653 RFXAPO00287 272 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 NOP56O00567 594 aaKnown RBP23.54■■□□□ 1.36
SHMT1-209ENST00000582653 TLL1O43897 1013 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 EFCAB14O75071 495 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 LGALS2P05162 132 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 HOXC8P31273 242 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 UBE2SQ16763 222 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 TSGA10IPQ3SY00 556 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 TSPYL2Q9H2G4 693 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-209ENST00000582653 RNPEPQ9H4A4 650 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 CERS4Q9HA82 394 aa23.54■■□□□ 1.36
SHMT1-209ENST00000582653 C17orf102A2RUQ5 167 aa23.53■■□□□ 1.36
SHMT1-209ENST00000582653 MRPS5P82675 430 aaKnown RBP23.53■■□□□ 1.36
SHMT1-209ENST00000582653 HEATR3Q7Z4Q2 680 aa23.53■■□□□ 1.36
SHMT1-209ENST00000582653 ATP6V0A1Q93050 837 aa23.53■■□□□ 1.36
SHMT1-209ENST00000582653 GPR20Q99678 358 aa23.53■■□□□ 1.36
SHMT1-209ENST00000582653 ZBED2Q9BTP6 218 aa23.53■■□□□ 1.36
SHMT1-209ENST00000582653 MTCH2Q9Y6C9 303 aa23.53■■□□□ 1.36
SHMT1-209ENST00000582653 ARHGEF15O94989 841 aa23.52■■□□□ 1.36
SHMT1-209ENST00000582653 CPA1P15085 419 aa23.52■■□□□ 1.36
SHMT1-209ENST00000582653 MBTPS1Q14703 1052 aa23.52■■□□□ 1.36
SHMT1-209ENST00000582653 TCTN1Q2MV58 587 aa23.52■■□□□ 1.36
SHMT1-209ENST00000582653 NLRX1Q86UT6 975 aa23.52■■□□□ 1.36
SHMT1-209ENST00000582653 EMSYQ7Z589 1322 aa23.52■■□□□ 1.36
SHMT1-209ENST00000582653 RSPH10B2B2RC85 870 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 ZBTB43O43298 467 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 GTPBP6O43824 516 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-209ENST00000582653 LGR5O75473 907 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 GJB5O95377 273 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 RSPH10BP0C881 870 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 SMIM10L2AP0DMW4 78 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 SMIM10L2BP0DMW5 78 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 THPOP40225 353 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 DEFB103AP81534 67 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 SP4Q02446 784 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 GIMAP8Q8ND71 665 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-209ENST00000582653 ARNTL2Q8WYA1 636 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 RAD9AQ99638 391 aa23.51■■□□□ 1.35
SHMT1-209ENST00000582653 EPOPA6NHQ4 379 aa23.5■■□□□ 1.35
SHMT1-209ENST00000582653 TREHO43280 583 aa23.5■■□□□ 1.35
SHMT1-209ENST00000582653 GNAT1P11488 350 aa23.5■■□□□ 1.35
SHMT1-209ENST00000582653 KRT32Q14532 448 aa23.5■■□□□ 1.35
SHMT1-209ENST00000582653 RTN1Q16799 776 aa23.5■■□□□ 1.35
SHMT1-209ENST00000582653 TMCO2Q7Z6W1 182 aaPredicted RBP23.5■■□□□ 1.35
SHMT1-209ENST00000582653 RBM28Q9NW13 759 aaKnown RBP23.5■■□□□ 1.35
SHMT1-209ENST00000582653 CNTNAP5Q8WYK1 1306 aa23.5■■□□□ 1.35
SHMT1-209ENST00000582653 KLF18A0A0U1RQI7 1052 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 ATP9AO75110 1047 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 FUT2Q10981 343 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 WWC2Q6AWC2 1192 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 DBF4BQ8NFT6 615 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 PCDHA6Q9UN73 950 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 PCDHA8Q9Y5H6 950 aa23.49■■□□□ 1.35
SHMT1-209ENST00000582653 V9GY48 417 aaPredicted RBP23.49■■□□□ 1.35
SHMT1-209ENST00000582653 DOCK5Q9H7D0 1870 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 LCHNA4D1U4 455 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 CAND2O75155 1236 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 ITGB5P18084 799 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 CDC27P30260 824 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 PLEKHG4Q58EX7 1191 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 UTP14CQ5TAP6 766 aaKnown RBP23.48■■□□□ 1.35
SHMT1-209ENST00000582653 TYW1BQ6NUM6 668 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 TRIM50Q86XT4 487 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 MICALL1Q8N3F8 863 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 GPRASP2Q96D09 838 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 CDHR1Q96JP9 859 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 FAM217BQ9NTX9 383 aaPredicted RBP23.48■■□□□ 1.35
SHMT1-209ENST00000582653 SETD4Q9NVD3 440 aa23.48■■□□□ 1.35
SHMT1-209ENST00000582653 ZNF215Q9UL58 517 aaPredicted RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms