RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 MAATS1Q7Z4T9 603 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 OTUD6BQ8N6M0 293 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 NEDD1Q8NHV4 660 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 CASKIN2Q8WXE0 1202 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 ANKIB1Q9P2G1 1089 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 PACSIN2Q9UNF0 486 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 NOL4O94818 638 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 GNA14O95837 355 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 LDHCP07864 332 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 GUCY1A3Q02108 690 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 KLHL30Q0D2K2 578 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 SEPT2Q15019 361 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 ENOX2Q16206 610 aaKnown RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 KCNK18Q7Z418 384 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 CD302Q8IX05 232 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 MARCH10Q8NA82 808 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 CEP95Q96GE4 821 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 CEP63Q96MT8 703 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 INPP4AQ96PE3 977 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 UBA5Q9GZZ9 404 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 EPN3Q9H201 632 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 COL16A1Q07092 1604 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 HMGB1P1B2RPK0 211 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 H0YHG0 523 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 SSBP05455 408 aaKnown RBP eCLIP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 TNNI2P48788 182 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 RNASE9P60153 205 aaKnown RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 PPP4CP60510 307 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 FBXW10Q5XX13 1052 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 MCTP2Q6DN12 878 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 ATP6V1G3Q96LB4 118 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 SETDB2Q96T68 719 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 NUDT12Q9BQG2 462 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 POLD4Q9HCU8 107 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 BMP2KQ9NSY1 1161 aaPredicted RBP13.43□□□□□ -0.26
SHMT1-208ENST00000582352 PANK4Q9NVE7 773 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 DDX60LQ5H9U9 1706 aaKnown RBP13.42□□□□□ -0.26
SHMT1-208ENST00000582352 MARCH6O60337 910 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 PPP1R37O75864 691 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 HLTFQ14527 1009 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHMT1-208ENST00000582352 ASIC2Q16515 512 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 CDC37Q16543 378 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-208ENST00000582352 KLHL7Q8IXQ5 586 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 CCDC24Q8N4L8 307 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 FAM133AQ8N9E0 248 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 USP38Q8NB14 1042 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 LINC00116Q8NCU8 138 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 YY1AP1Q9H869 796 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 FRMPD2Q68DX3 1309 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-208ENST00000582352 A0A087X0T9 212 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 USP17L5A8MUK1 530 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 MEFVO15553 781 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-208ENST00000582352 RAD51CO43502 376 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 FAM228BP0C875 321 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 NAA35Q5VZE5 725 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 CERS3Q8IU89 383 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 PIK3R5Q8WYR1 880 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 COA7Q96BR5 231 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 ADAMTS1Q9UHI8 967 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 PLAAQ9Y263 795 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 CAPN7Q9Y6W3 813 aa13.42□□□□□ -0.26
SHMT1-208ENST00000582352 SBF2Q86WG5 1849 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 IRS2Q9Y4H2 1338 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 BTDP43251 543 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 IRX3P78415 501 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-208ENST00000582352 CEP85LQ5SZL2 805 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 NELFCDQ8IXH7 590 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 TEX11Q8IYF3 940 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.41□□□□□ -0.26
SHMT1-208ENST00000582352 DNAJC19Q96DA6 116 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 PACSIN1Q9BY11 444 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 TAF1DQ9H5J8 278 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-208ENST00000582352 RIOX1Q9H6W3 641 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 TBC1D7Q9P0N9 293 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 KCNK3O14649 394 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 RPS6KA1Q15418 735 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 GRIK5Q16478 980 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 PTGISQ16647 500 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 ZNF804AQ7Z570 1209 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 TRIM59Q8IWR1 403 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 CCDC65Q8IXS2 484 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 CNPY4Q8N129 248 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 C1orf131Q8NDD1 294 aaKnown RBP13.41□□□□□ -0.26
SHMT1-208ENST00000582352 RTFDC1Q9BY42 306 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-208ENST00000582352 CENPHQ9H3R5 247 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 KDM3AQ9Y4C1 1321 aa13.41□□□□□ -0.26
SHMT1-208ENST00000582352 CDK5RAP2Q96SN8 1893 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 HNRNPH1P31943 449 aaKnown RBP13.4□□□□□ -0.26
SHMT1-208ENST00000582352 HSPA9P38646 679 aaKnown RBP13.4□□□□□ -0.26
SHMT1-208ENST00000582352 MNAT1P51948 309 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 EMC10Q5UCC4 262 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 ZNF473Q8WTR7 871 aaKnown RBP13.4□□□□□ -0.26
SHMT1-208ENST00000582352 KANSL2Q9H9L4 492 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 AIPL1Q9NZN9 384 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 DDX25Q9UHL0 483 aaKnown RBP13.4□□□□□ -0.26
SHMT1-208ENST00000582352 MYH4Q9Y623 1939 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 SPATA31A1Q5TZJ5 1347 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 CES2O00748 559 aa13.4□□□□□ -0.26
SHMT1-208ENST00000582352 PDHBP11177 359 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms