RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 LRCH2Q5VUJ6 765 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 ARHGEF16Q5VV41 709 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 PCNX4Q63HM2 1172 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 GPAT2Q6NUI2 795 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 POTEBQ6S5H4 581 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 SV2BQ7L1I2 683 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 FASTKD5Q7L8L6 764 aaKnown RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 NIPA1Q7RTP0 329 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 MB21D1Q8N884 522 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 CHST13Q8NET6 341 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 ERMNQ8TAM6 284 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 ZNF526Q8TF50 670 aaPredicted RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 LARP4BQ92615 738 aaKnown RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 RMDN3Q96TC7 470 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 C7orf25Q9BPX7 421 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 PDCD2LQ9BRP1 358 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 PAGR1Q9BTK6 254 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 GBA2Q9HCG7 927 aaPredicted RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 A1CFQ9NQ94 594 aaKnown RBP11.79□□□□□ -0.52
SS18-217ENST00000580958 RMND1Q9NWS8 449 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 UBIAD1Q9Y5Z9 338 aa11.79□□□□□ -0.52
SS18-217ENST00000580958 UNCXA6NJT0 531 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 EML1O00423 815 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 IKBKBO14920 756 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 GAS7O60861 476 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 PSMD10O75832 226 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 CELF2O95319 508 aaKnown RBP11.78□□□□□ -0.52
SS18-217ENST00000580958 ITGB5P18084 799 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 OSBPP22059 807 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 FKBP1BP68106 108 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 AMPD3Q01432 767 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 PABPC4Q13310 644 aaKnown RBP eCLIP11.78□□□□□ -0.52
SS18-217ENST00000580958 SNAPC2Q13487 334 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 KMT5BQ4FZB7 885 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 HAUS3Q68CZ6 603 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 RIOX2Q8IUF8 465 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 SMYD4Q8IYR2 804 aaPredicted RBP11.78□□□□□ -0.52
SS18-217ENST00000580958 SLAIN1Q8ND83 568 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 ZNF577Q9BSK1 485 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 TEKT3Q9BXF9 490 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 TRIM9Q9C026 710 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 NT5C3AQ9H0P0 336 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 CYP39A1Q9NYL5 469 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 PKD2L1Q9P0L9 805 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 KIAA1024Q9UPX6 916 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 STK24Q9Y6E0 443 aa11.78□□□□□ -0.52
SS18-217ENST00000580958 MYMKA6NI61 221 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 PPP1R3GB7ZBB8 358 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 E9PMD0 336 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 CHMP2AO43633 222 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 BCRP11274 1271 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 CCND2P30279 289 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 ZNF75DP51815 510 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 TPM4P67936 248 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 ASIC1P78348 528 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 MYL5Q02045 173 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 MKRN3Q13064 507 aaKnown RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 PPP2R5CQ13362 524 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 KCNB1Q14721 858 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 ZNF658Q5TYW1 1059 aaPredicted RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 OTOP1Q7RTM1 612 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 TRMT44Q8IYL2 757 aaKnown RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 C2orf69Q8N8R5 385 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 CCDC47Q96A33 483 aaKnown RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 EIF2AK1Q9BQI3 630 aaKnown RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 POLR3CQ9BUI4 534 aaPredicted RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 WDR11Q9BZH6 1224 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 TRIM5Q9C035 493 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 MAF1Q9H063 256 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 SPATC1LQ9H0A9 340 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 UNC45AQ9H3U1 944 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 AGO4Q9HCK5 861 aaKnown RBP11.77□□□□□ -0.53
SS18-217ENST00000580958 JADE2Q9NQC1 790 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 GDAQ9Y2T3 454 aa11.77□□□□□ -0.53
SS18-217ENST00000580958 ARID2Q68CP9 1835 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 DDX39AO00148 427 aaKnown RBP11.76□□□□□ -0.53
SS18-217ENST00000580958 IPO5O00410 1097 aaKnown RBP11.76□□□□□ -0.53
SS18-217ENST00000580958 SSBP05455 408 aaKnown RBP eCLIP11.76□□□□□ -0.53
SS18-217ENST00000580958 NR3C2P08235 984 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 PLA2G4BP0C869 781 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 SPATA31C1P0DKV0 1188 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 RPA1P27694 616 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 PSEN1P49768 467 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 STX17P56962 302 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 CT47A1Q5JQC4 288 aaPredicted RBP11.76□□□□□ -0.53
SS18-217ENST00000580958 KLHL10Q6JEL2 608 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 XRRA1Q6P2D8 792 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 SARM1Q6SZW1 724 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 DYMQ7RTS9 669 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 NCAPG2Q86XI2 1143 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 CATSPER3Q86XQ3 398 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 ENOX1Q8TC92 643 aaKnown RBP11.76□□□□□ -0.53
SS18-217ENST00000580958 NSUN6Q8TEA1 469 aaKnown RBP11.76□□□□□ -0.53
SS18-217ENST00000580958 DYDC2Q96IM9 177 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 MOV10L1Q9BXT6 1211 aaKnown RBP11.76□□□□□ -0.53
SS18-217ENST00000580958 HSD3B7Q9H2F3 369 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 TXNRD2Q9NNW7 524 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 KCNH7Q9NS40 1196 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 EXOC1Q9NV70 894 aa11.76□□□□□ -0.53
SS18-217ENST00000580958 FBXO40Q9UH90 709 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms