RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SYNE3Q6ZMZ3 975 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 DHX32Q7L7V1 743 aaKnown RBP16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 DEFB128Q7Z7B8 93 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 RPAINQ86UA6 219 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 HERC6Q8IVU3 1022 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 ATXN2LQ8WWM7 1075 aaKnown RBP16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 KCNB2Q92953 911 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 NEK1Q96PY6 1258 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 GLT8D2Q9H1C3 349 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 NKX2-4Q9H2Z4 354 aa16.68■□□□□ 0.26
SMARCE1-216ENST00000580419 MICAL3Q7RTP6 2002 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 PTPRSQ13332 1948 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 NOP56O00567 594 aaKnown RBP16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 LGALS2P05162 132 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 RPLP2P05387 115 aaKnown RBP16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 ZNF286BP0CG31 522 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 ADAM17P78536 824 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 PPP2R2DQ66LE6 453 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 GPR20Q99678 358 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 COL25A1Q9BXS0 654 aaPredicted RBP16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 FTOQ9C0B1 505 aaKnown RBP eCLIP16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 ZNF215Q9UL58 517 aaPredicted RBP16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 REV3LO60673 3130 aa16.67■□□□□ 0.26
SMARCE1-216ENST00000580419 BDP1A6H8Y1 2624 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 CDC45O75419 566 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 PLEKHA8P1O95397 391 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 FOSP01100 380 aaPredicted RBP16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 KCNJ6P48051 423 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 USP17L6PQ6QN14 398 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 MYL10Q9BUA6 226 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 PRDM12Q9H4Q4 367 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 DOCK5Q9H7D0 1870 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 EHMT1Q9H9B1 1298 aa16.66■□□□□ 0.26
SMARCE1-216ENST00000580419 C17orf102A2RUQ5 167 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 NBNO60934 754 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 WDR5P61964 334 aaKnown RBP16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 FUT2Q10981 343 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 MKRN4PQ13434 485 aaPredicted RBP16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 IKBKEQ14164 716 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 ADGRE1Q14246 886 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 ALG1Q9BT22 464 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 LMCD1Q9NZU5 365 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 UBIAD1Q9Y5Z9 338 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 BRWD1Q9NSI6 2320 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 NRCAMQ92823 1304 aa16.65■□□□□ 0.26
SMARCE1-216ENST00000580419 CCDC196A0A1B0GTZ2 297 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 SPDYE3A6NKU9 549 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 LGR5O75473 907 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 SMIM10L2AP0DMW4 78 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 SMIM10L2BP0DMW5 78 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 KCNA2P16389 499 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 TJAP1Q5JTD0 557 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 FAM26DQ5JW98 314 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 MCTP2Q6DN12 878 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 CYFIP1Q7L576 1253 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 GPKOWQ92917 476 aaPredicted RBP eCLIP16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 ATP6V0A1Q93050 837 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 RNPEPQ9H4A4 650 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 COL4A6Q14031 1691 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 NID2Q14112 1375 aa16.64■□□□□ 0.25
SMARCE1-216ENST00000580419 ZBTB43O43298 467 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 GJB5O95377 273 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 CA3P07451 260 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 ITGB5P18084 799 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 RABGGTBP53611 331 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 TAP1Q03518 808 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 COL9A3Q14050 684 aaPredicted RBP16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 PLEKHG4Q58EX7 1191 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 ZNF618Q5T7W0 954 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 TAF2Q6P1X5 1199 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 MICU3Q86XE3 530 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 SEPT1Q8WYJ6 367 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 TNPO1Q92973 898 aaKnown RBP16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 RAD9AQ99638 391 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 TSPYL2Q9H2G4 693 aaPredicted RBP16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 RIC8AQ9NPQ8 531 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 JADE2Q9NQC1 790 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 CNTNAP5Q8WYK1 1306 aa16.63■□□□□ 0.25
SMARCE1-216ENST00000580419 XIRP2A4UGR9 3374 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 RSPH10B2B2RC85 870 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 RSPH10BP0C881 870 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 CHMP4BP1P59074 171 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 AP3B2Q13367 1082 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 HIC1Q14526 733 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 MBTPS1Q14703 1052 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 RTN1Q16799 776 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 NIPA1Q7RTP0 329 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 USP38Q8NB14 1042 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 APBB2Q92870 758 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 AGXT2Q9BYV1 514 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 RNF39Q9H2S5 420 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 BARHL2Q9NY43 387 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 RTEL1Q9NZ71 1219 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 THEGQ9P2T0 379 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 PCDHA6Q9UN73 950 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 PCDHA8Q9Y5H6 950 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 NFASCO94856 1347 aa16.62■□□□□ 0.25
SMARCE1-216ENST00000580419 ESYT2A0FGR8 921 aa16.61■□□□□ 0.25
SMARCE1-216ENST00000580419 TLL1O43897 1013 aa16.61■□□□□ 0.25
SMARCE1-216ENST00000580419 MTMR1Q13613 665 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms