RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 CRKP46108 304 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 CASP5P51878 434 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 VAV2P52735 878 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 KCNMA1Q12791 1236 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 PABPC4Q13310 644 aaKnown RBP eCLIP11.61□□□□□ -0.55
TOP3A-209ENST00000580095 MAN2A1Q16706 1144 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 SKIDA1Q1XH10 827 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 TMEM119Q4V9L6 283 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 PVALEFA0A1B0GWK0 134 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 HLA-DOAP06340 250 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 SMARCA1P28370 1054 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 USP14P54578 494 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 RNASE9P60153 205 aaKnown RBP11.61□□□□□ -0.55
TOP3A-209ENST00000580095 POLR2FP61218 127 aaKnown RBP11.61□□□□□ -0.55
TOP3A-209ENST00000580095 JAG1P78504 1218 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 PDIA5Q14554 519 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 CDC37Q16543 378 aaPredicted RBP11.61□□□□□ -0.55
TOP3A-209ENST00000580095 PAPD7Q5XG87 772 aaKnown RBP11.61□□□□□ -0.55
TOP3A-209ENST00000580095 RETREG2Q8NC44 543 aa11.61□□□□□ -0.55
TOP3A-209ENST00000580095 PLA2G4BP0C869 781 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 CLK2P49760 499 aaKnown RBP11.6□□□□□ -0.55
TOP3A-209ENST00000580095 SH3BP5LQ7L8J4 393 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 CCDC170Q8IYT3 715 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 BAP1Q92560 729 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 MYH1P12882 1939 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 SFI1A8K8P3 1242 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 SLFN13Q68D06 897 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 PPP4R3AQ6IN85 833 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 FAM43BQ6ZT52 329 aaPredicted RBP11.6□□□□□ -0.55
TOP3A-209ENST00000580095 SIAH1Q8IUQ4 282 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 HNRNPLLQ8WVV9 542 aaKnown RBP11.6□□□□□ -0.55
TOP3A-209ENST00000580095 MTMR8Q96EF0 704 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 MS4A14Q96JA4 679 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 LSM14BQ9BX40 385 aaKnown RBP11.6□□□□□ -0.55
TOP3A-209ENST00000580095 CDK5RAP2Q96SN8 1893 aa11.6□□□□□ -0.55
TOP3A-209ENST00000580095 MMP10P09238 476 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 ACTN1P12814 892 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 MAGEA1P43355 309 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 TUBB2AQ13885 445 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 CERKLQ49MI3 558 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 TSG101Q99816 390 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 TUBB2BQ9BVA1 445 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 ANO3Q9BYT9 981 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 QTRT2Q9H974 415 aaKnown RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 PACSIN2Q9UNF0 486 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 NHSQ6T4R5 1651 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 POTEB2H3BUK9 544 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 TLR2O60603 784 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 NT5C2P49902 561 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 UBXN2AP68543 259 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 EHHADHQ08426 723 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 ARSHQ5FYA8 562 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 COL23A1Q86Y22 540 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 SCFD1Q8WVM8 642 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 SH2D4AQ9H788 454 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 COL4A3BPQ9Y5P4 624 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 RSPH10B2B2RC85 870 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 NOL4O94818 638 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 RSPH10BP0C881 870 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 LRRC63Q05C16 580 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 GPATCH4Q5T3I0 446 aaKnown RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 ZNF772Q68DY9 489 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 LRRC1Q9BTT6 524 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 GOLPH3Q9H4A6 298 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 TDRD3Q9H7E2 651 aaKnown RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 FAM198AQ9UFP1 575 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 DMGDHQ9UI17 866 aaKnown RBP11.59□□□□□ -0.55
TOP3A-209ENST00000580095 ADAMTSL1Q8N6G6 1762 aa11.59□□□□□ -0.55
TOP3A-209ENST00000580095 A0A1W2PQJ5 194 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 FAM86B1E9PN63 330 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 MEIS2O14770 477 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 ZBTB39O15060 712 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 FTCDO95954 541 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 FAM86B2P0C5J1 330 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 CYP11B2P19099 503 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 POLD1P28340 1107 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 FKBP3Q00688 224 aaKnown RBP11.58□□□□□ -0.56
TOP3A-209ENST00000580095 KCNA1Q09470 495 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 RAPGEF1Q13905 1077 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 ZCWPW2Q504Y3 356 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 FAM83BQ5T0W9 1011 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 CCDC84Q86UT8 332 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-209ENST00000580095 CATSPER3Q86XQ3 398 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 CREG2Q8IUH2 290 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 PACSIN1Q9BY11 444 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 BMP2KQ9NSY1 1161 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-209ENST00000580095 SWAP70Q9UH65 585 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 ATF5Q9Y2D1 282 aaPredicted RBP11.58□□□□□ -0.56
TOP3A-209ENST00000580095 TAF1LQ8IZX4 1826 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 PLIN4Q96Q06 1357 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 USO1O60763 962 aaKnown RBP11.58□□□□□ -0.56
TOP3A-209ENST00000580095 ARHGAP4P98171 946 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 ICA1Q05084 483 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 HGSNATQ68CP4 663 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 PDXDC1Q6P996 788 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 FAM133AQ8N9E0 248 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 EHBP1Q8NDI1 1231 aa11.58□□□□□ -0.56
TOP3A-209ENST00000580095 PURBQ96QR8 312 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms