RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 JADE2Q9NQC1 790 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 HDAC6Q9UBN7 1215 aa27.33■■□□□ 1.97
SHMT1-206ENST00000579558 CPLX1O14810 134 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 SP4Q02446 784 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 C16orf59Q7L2K0 433 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 GPR20Q99678 358 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 C16orf70Q9BSU1 422 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 ZMYND12Q9H0C1 365 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 GTF2IRD1Q9UHL9 959 aa27.32■■□□□ 1.96
SHMT1-206ENST00000579558 ATP9AO75110 1047 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 LGALS2P05162 132 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 KCNA2P16389 499 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 TMEM240Q5SV17 173 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 JAKMIP3Q5VZ66 844 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 PSRC1Q6PGN9 363 aaPredicted RBP27.31■■□□□ 1.96
SHMT1-206ENST00000579558 TRIM22Q8IYM9 498 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 SCLYQ96I15 445 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 MXRA8Q9BRK3 442 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 PKD2L1Q9P0L9 805 aa27.31■■□□□ 1.96
SHMT1-206ENST00000579558 SREBF1P36956 1147 aa27.3■■□□□ 1.96
SHMT1-206ENST00000579558 SSRP1Q08945 709 aaKnown RBP27.3■■□□□ 1.96
SHMT1-206ENST00000579558 ZNF365Q70YC5 407 aa27.3■■□□□ 1.96
SHMT1-206ENST00000579558 CCDC148Q8NFR7 591 aa27.3■■□□□ 1.96
SHMT1-206ENST00000579558 H3BRB1 525 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 MAFGO15525 162 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 GNA11P29992 359 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 BFSP2Q13515 415 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 CPLX2Q6PUV4 134 aaKnown RBP27.29■■□□□ 1.96
SHMT1-206ENST00000579558 REXO1Q8N1G1 1221 aaKnown RBP27.29■■□□□ 1.96
SHMT1-206ENST00000579558 RETREG2Q8NC44 543 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 TUT1Q9H6E5 874 aaKnown RBP27.29■■□□□ 1.96
SHMT1-206ENST00000579558 VPS54Q9P1Q0 977 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 TELO2Q9Y4R8 837 aa27.29■■□□□ 1.96
SHMT1-206ENST00000579558 PITPNM1O00562 1244 aa27.28■■□□□ 1.96
SHMT1-206ENST00000579558 SEC24BO95487 1268 aa27.28■■□□□ 1.96
SHMT1-206ENST00000579558 UTP14CQ5TAP6 766 aaKnown RBP27.28■■□□□ 1.96
SHMT1-206ENST00000579558 MCTP2Q6DN12 878 aa27.28■■□□□ 1.96
SHMT1-206ENST00000579558 RPUSD2Q8IZ73 545 aaKnown RBP27.28■■□□□ 1.96
SHMT1-206ENST00000579558 CCDC155Q8N6L0 562 aa27.28■■□□□ 1.96
SHMT1-206ENST00000579558 CYP2W1Q8TAV3 490 aa27.28■■□□□ 1.96
SHMT1-206ENST00000579558 CTAGE1Q96RT6 745 aa27.28■■□□□ 1.96
SHMT1-206ENST00000579558 ADAMTS3O15072 1205 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 ZNF76P36508 570 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 ARHGAP4P98171 946 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 CEP55Q53EZ4 464 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 BICD2Q8TD16 824 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 IL17RAQ96F46 866 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 SLKQ9H2G2 1235 aaPredicted RBP27.27■■□□□ 1.96
SHMT1-206ENST00000579558 KCNH7Q9NS40 1196 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 TANC1Q9C0D5 1861 aa27.27■■□□□ 1.96
SHMT1-206ENST00000579558 FGBP02675 491 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 SMAD3P84022 425 aaKnown RBP27.26■■□□□ 1.95
SHMT1-206ENST00000579558 ANKRD1Q15327 319 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 Q7L0L9 218 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 TRIM50Q86XT4 487 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 DEFB123Q8N688 67 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 CAGE1Q8TC20 777 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 SH3GLB2Q9NR46 395 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 ZNF215Q9UL58 517 aaPredicted RBP27.26■■□□□ 1.95
SHMT1-206ENST00000579558 TPCN1Q9ULQ1 816 aa27.26■■□□□ 1.95
SHMT1-206ENST00000579558 DEXIO95424 95 aa27.25■■□□□ 1.95
SHMT1-206ENST00000579558 AK2P54819 239 aa27.25■■□□□ 1.95
SHMT1-206ENST00000579558 ZNF200P98182 395 aaPredicted RBP27.25■■□□□ 1.95
SHMT1-206ENST00000579558 DHX38Q92620 1227 aaKnown RBP27.25■■□□□ 1.95
SHMT1-206ENST00000579558 MTIF3Q9H2K0 278 aaKnown RBP27.25■■□□□ 1.95
SHMT1-206ENST00000579558 SCN5AQ14524 2016 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 TRIP12Q14669 1992 aaPredicted RBP27.24■■□□□ 1.95
SHMT1-206ENST00000579558 IQCF3P0C7M6 154 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 SMIM10L2AP0DMW4 78 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 SMIM10L2BP0DMW5 78 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 ARP10275 920 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 RFC2P35250 354 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 TCF7P36402 384 aaPredicted RBP27.24■■□□□ 1.95
SHMT1-206ENST00000579558 NLRP5P59047 1200 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 SCRN1Q12765 414 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 PTK7Q13308 1070 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 RASIP1Q5U651 963 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 DEFB128Q7Z7B8 93 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 RASGRP4Q8TDF6 673 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 AFAP1L1Q8TED9 768 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 SEPT1Q8WYJ6 367 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 HERVK_113Q902F9 699 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 SDF4Q9BRK5 362 aa27.24■■□□□ 1.95
SHMT1-206ENST00000579558 JPH1Q9HDC5 661 aaPredicted RBP27.24■■□□□ 1.95
SHMT1-206ENST00000579558 HSFX4A0A1B0GTS1 333 aaPredicted RBP27.23■■□□□ 1.95
SHMT1-206ENST00000579558 HSFX3A0A1B0GWH4 333 aaPredicted RBP27.23■■□□□ 1.95
SHMT1-206ENST00000579558 C17orf102A2RUQ5 167 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 MEIS1O00470 390 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 CDKL5O76039 1030 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 PFKMP08237 780 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 HIC1Q14526 733 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 NIPA1Q7RTP0 329 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 OTOP2Q7RTS6 562 aa27.23■■□□□ 1.95
SHMT1-206ENST00000579558 AGO4Q9HCK5 861 aaKnown RBP27.23■■□□□ 1.95
SHMT1-206ENST00000579558 LAMA2P24043 3122 aaKnown RBP27.23■■□□□ 1.95
SHMT1-206ENST00000579558 NFASCO94856 1347 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 GSTTP1A0A1W2PQM5 241 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 PFKFB2O60825 505 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 CYP3A4P08684 503 aa27.22■■□□□ 1.95
SHMT1-206ENST00000579558 FAM109BQ6ICB4 259 aaPredicted RBP27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms