RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 KCNH7Q9NS40 1196 aa22.05■■□□□ 1.12
SS18-208ENST00000577751 PRKAG2Q9UGJ0 569 aa22.05■■□□□ 1.12
SS18-208ENST00000577751 COLQQ9Y215 455 aaPredicted RBP22.05■■□□□ 1.12
SS18-208ENST00000577751 EDIL3O43854 480 aa22.04■■□□□ 1.12
SS18-208ENST00000577751 NFRKBQ6P4R8 1299 aa22.04■■□□□ 1.12
SS18-208ENST00000577751 CHRDL2Q6WN34 429 aa22.04■■□□□ 1.12
SS18-208ENST00000577751 PRDM5Q9NQX1 630 aaPredicted RBP22.04■■□□□ 1.12
SS18-208ENST00000577751 PCDH10Q9P2E7 1040 aa22.04■■□□□ 1.12
SS18-208ENST00000577751 TBX21Q9UL17 535 aa22.04■■□□□ 1.12
SS18-208ENST00000577751 IGLV3-22A0A075B6J6 115 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 FAM86B1E9PN63 330 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 TLR3O15455 904 aaKnown RBP22.03■■□□□ 1.12
SS18-208ENST00000577751 F2P00734 622 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 FAM86B2P0C5J1 330 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 XBP1P17861 261 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 BMP8BP34820 402 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 MAGEA10P43363 369 aaPredicted RBP22.03■■□□□ 1.12
SS18-208ENST00000577751 GPR20Q99678 358 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 C16orf70Q9BSU1 422 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 TMEM39AQ9NV64 488 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 KCNJ14Q9UNX9 436 aa22.03■■□□□ 1.12
SS18-208ENST00000577751 HAS3O00219 553 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 JAK2O60674 1132 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 ARP10275 920 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 ITGB8P26012 769 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 CIITAP33076 1130 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 PTPN11Q06124 597 aaPredicted RBP22.02■■□□□ 1.12
SS18-208ENST00000577751 ALG1Q9BT22 464 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 SH2B1Q9NRF2 756 aaPredicted RBP22.02■■□□□ 1.12
SS18-208ENST00000577751 GJB4Q9NTQ9 266 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 TELO2Q9Y4R8 837 aa22.02■■□□□ 1.12
SS18-208ENST00000577751 NOP56O00567 594 aaKnown RBP22.01■■□□□ 1.11
SS18-208ENST00000577751 B4GALT4O60513 344 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 ZNF286BP0CG31 522 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 ZNF76P36508 570 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 USP11P51784 963 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 SESTD1Q86VW0 696 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 CCDC83Q8IWF9 413 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 LLPHQ9BRT6 129 aaKnown RBP22.01■■□□□ 1.11
SS18-208ENST00000577751 KATNAL1Q9BW62 490 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 AGO4Q9HCK5 861 aaKnown RBP22.01■■□□□ 1.11
SS18-208ENST00000577751 NFASCO94856 1347 aa22.01■■□□□ 1.11
SS18-208ENST00000577751 ST18O60284 1047 aa22■■□□□ 1.11
SS18-208ENST00000577751 PSEN2P49810 448 aa22■■□□□ 1.11
SS18-208ENST00000577751 MDM2Q00987 491 aaPredicted RBP22■■□□□ 1.11
SS18-208ENST00000577751 PPP1R13LQ8WUF5 828 aa22■■□□□ 1.11
SS18-208ENST00000577751 TRPV6Q9H1D0 765 aa22■■□□□ 1.11
SS18-208ENST00000577751 LGALS2P05162 132 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 RAG1P15918 1043 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 ITGB3BPQ13352 177 aaPredicted RBP21.99■■□□□ 1.11
SS18-208ENST00000577751 MFSD10Q14728 455 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 KIAA0753Q2KHM9 967 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 PLA2G4DQ86XP0 818 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 TBCKQ8TEA7 893 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 BADQ92934 168 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 LBHD1Q9BQE6 289 aaPredicted RBP21.99■■□□□ 1.11
SS18-208ENST00000577751 PKD2L1Q9P0L9 805 aa21.99■■□□□ 1.11
SS18-208ENST00000577751 GSTTP1A0A1W2PQM5 241 aa21.98■■□□□ 1.11
SS18-208ENST00000577751 H3BRB1 525 aa21.98■■□□□ 1.11
SS18-208ENST00000577751 TIMP1P01033 207 aa21.98■■□□□ 1.11
SS18-208ENST00000577751 SUPT20HL2P0C7V6 817 aa21.98■■□□□ 1.11
SS18-208ENST00000577751 SETQ01105 290 aaPredicted RBP21.98■■□□□ 1.11
SS18-208ENST00000577751 FAM47CQ5HY64 1035 aa21.98■■□□□ 1.11
SS18-208ENST00000577751 LENG9Q96B70 501 aa21.98■■□□□ 1.11
SS18-208ENST00000577751 TUT1Q9H6E5 874 aaKnown RBP21.98■■□□□ 1.11
SS18-208ENST00000577751 JPH1Q9HDC5 661 aaPredicted RBP21.98■■□□□ 1.11
SS18-208ENST00000577751 TRMT13Q9NUP7 481 aaKnown RBP21.98■■□□□ 1.11
SS18-208ENST00000577751 A0A1W2PPC1 479 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 DHX15O43143 795 aaKnown RBP21.97■■□□□ 1.11
SS18-208ENST00000577751 CD2BP2O95400 341 aaKnown RBP21.97■■□□□ 1.11
SS18-208ENST00000577751 SP4Q02446 784 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 KRT25Q7Z3Z0 450 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 SEPT1Q8WYJ6 367 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 SDF4Q9BRK5 362 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 HDAC6Q9UBN7 1215 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 SLC9A2Q9UBY0 812 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 GTF2IRD1Q9UHL9 959 aa21.97■■□□□ 1.11
SS18-208ENST00000577751 RANBP2P49792 3224 aaKnown RBP21.97■■□□□ 1.11
SS18-208ENST00000577751 CYP3A7-CYP3A51PA0A087WV96 503 aa21.96■■□□□ 1.11
SS18-208ENST00000577751 CYP3A7P24462 503 aa21.96■■□□□ 1.11
SS18-208ENST00000577751 TCF7P36402 384 aaPredicted RBP21.96■■□□□ 1.11
SS18-208ENST00000577751 CHMP4BP1P59074 171 aa21.96■■□□□ 1.11
SS18-208ENST00000577751 NONOQ15233 471 aaKnown RBP eCLIP21.96■■□□□ 1.11
SS18-208ENST00000577751 HABP4Q5JVS0 413 aaKnown RBP21.96■■□□□ 1.11
SS18-208ENST00000577751 GDF6Q6KF10 455 aaPredicted RBP21.96■■□□□ 1.11
SS18-208ENST00000577751 C7orf31Q8N865 590 aa21.96■■□□□ 1.11
SS18-208ENST00000577751 OXER1Q8TDS5 423 aa21.96■■□□□ 1.11
SS18-208ENST00000577751 CTAGE1Q96RT6 745 aa21.96■■□□□ 1.11
SS18-208ENST00000577751 IPO5O00410 1097 aaKnown RBP21.95■■□□□ 1.1
SS18-208ENST00000577751 ATG7O95352 703 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 MMP1P03956 469 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 MCM2P49736 904 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 PRR16Q569H4 304 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 MFSD5Q6N075 450 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 MOXD1Q6UVY6 613 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 TNFRSF25Q93038 417 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 MBOAT7Q96N66 472 aa21.95■■□□□ 1.1
SS18-208ENST00000577751 NOC4LQ9BVI4 516 aaKnown RBP21.95■■□□□ 1.1
SS18-208ENST00000577751 UBE2OQ9C0C9 1292 aaKnown RBP21.95■■□□□ 1.1
SS18-208ENST00000577751 LGR5O75473 907 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms