RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GRIN2DO15399 1336 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 TDP2O95551 362 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 BTDP43251 543 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 EHHADHQ08426 723 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 RPS6KA1Q15418 735 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 HGSNATQ68CP4 663 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 MREGQ8N565 214 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 EHD4Q9H223 541 aa11.84□□□□□ -0.51
CCDC40-207ENST00000572253 MYH1P12882 1939 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 HMGB1P1B2RPK0 211 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-207ENST00000572253 GLI1P08151 1106 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 NR1D1P20393 614 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 TMEM119Q4V9L6 283 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 ASPRV1Q53RT3 343 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 NAP1L4Q99733 375 aaKnown RBP11.83□□□□□ -0.52
CCDC40-207ENST00000572253 KCNMA1Q12791 1236 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 C10orf76Q5T2E6 689 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-207ENST00000572253 TMC4Q7Z404 712 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 LRRC45Q96CN5 670 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 CEP95Q96GE4 821 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 ESYT3A0FGR9 886 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 USP17L5A8MUK1 530 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 CETN3O15182 167 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 SLC37A4O43826 429 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 CDC37Q16543 378 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-207ENST00000572253 CD302Q8IX05 232 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 IQCKQ8N0W5 287 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 SPAG5Q96R06 1193 aa11.83□□□□□ -0.52
CCDC40-207ENST00000572253 SPATA31A1Q5TZJ5 1347 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 MYH14Q7Z406 1995 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 KRT14P02533 472 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 KLRC1P26715 233 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 PPP1R18Q6NYC8 613 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 SUGP1Q8IWZ8 645 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 KLHL7Q8IXQ5 586 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 SH2D3CQ8N5H7 860 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 LINC00116Q8NCU8 138 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 COA7Q96BR5 231 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 ATP6V1G3Q96LB4 118 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 RIOX1Q9H6W3 641 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 DDX25Q9UHL0 483 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 NARFQ9UHQ1 456 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 PCDHGC5Q9Y5F6 944 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 GCFC2P16383 781 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 MRPL12P52815 198 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 MEI1Q5TIA1 1274 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 NELFCDQ8IXH7 590 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 PBKQ96KB5 322 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 CENPHQ9H3R5 247 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 FRMPD2Q68DX3 1309 aaPredicted RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 ATXN2Q99700 1313 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 TAF1P21675 1872 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 RNASE9P60153 205 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 HERC4Q5GLZ8 1057 aaPredicted RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 CEP85LQ5SZL2 805 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 VPS36Q86VN1 386 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 CCDC24Q8N4L8 307 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 EPN3Q9H201 632 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 ZHX3Q9H4I2 956 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 TBC1D7Q9P0N9 293 aa11.82□□□□□ -0.52
CCDC40-207ENST00000572253 BZW2Q9Y6E2 419 aaKnown RBP11.82□□□□□ -0.52
CCDC40-207ENST00000572253 KCNK3O14649 394 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 LSP1P33241 339 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CUL1Q13616 776 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 MCTP2Q6DN12 878 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 PPP4R3CPQ6ZMV5 832 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 FAM133AQ8N9E0 248 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 LMBR1Q8WVP7 490 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CASKIN2Q8WXE0 1202 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 ADAMTS1Q9UHI8 967 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 PCDHA12Q9UN75 941 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 GUCY2CP25092 1073 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 ZCWPW2Q504Y3 356 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 PPP4R3AQ6IN85 833 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 USP38Q8NB14 1042 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 C1orf131Q8NDD1 294 aaKnown RBP11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CUL5Q93034 780 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 TAF1DQ9H5J8 278 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-207ENST00000572253 GCOM1H8Y6P7 765 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CES2O00748 559 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 PPP1R37O75864 691 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 FAM153BP0C7A2 387 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 MYZAPP0CAP1 466 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CDR1P51861 262 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 ADAM9Q13443 819 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 FAM153CQ494X1 144 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 LRIG3Q6UXM1 1119 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 RUFY4Q6ZNE9 571 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 GPBP1Q86WP2 473 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 TRIM59Q8IWR1 403 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 EIF1ADQ8N9N8 165 aaKnown RBP11.81□□□□□ -0.52
CCDC40-207ENST00000572253 RNPC3Q96LT9 517 aaKnown RBP11.81□□□□□ -0.52
CCDC40-207ENST00000572253 INPP4AQ96PE3 977 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-207ENST00000572253 FAM153AQ9UHL3 310 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CAPN7Q9Y6W3 813 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 CNTNAP4Q9C0A0 1308 aa11.81□□□□□ -0.52
CCDC40-207ENST00000572253 ZNF233A6NK53 670 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 CEP104O60308 925 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 TLR2O60603 784 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms