RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 CKBP12277 381 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 FGD1P98174 961 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 APOA5Q6Q788 366 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 DHX32Q7L7V1 743 aaKnown RBP11.19□□□□□ -0.62
CIITA-207ENST00000571545 SRBD1Q8N5C6 995 aaKnown RBP11.19□□□□□ -0.62
CIITA-207ENST00000571545 NKX2-4Q9H2Z4 354 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 TUT1Q9H6E5 874 aaKnown RBP11.19□□□□□ -0.62
CIITA-207ENST00000571545 KAT6AQ92794 2004 aa11.19□□□□□ -0.62
CIITA-207ENST00000571545 ZBTB43O43298 467 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 REC8O95072 547 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 FOSP01100 380 aaPredicted RBP11.18□□□□□ -0.62
CIITA-207ENST00000571545 CXCL10P02778 98 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 RPLP2P05387 115 aaKnown RBP11.18□□□□□ -0.62
CIITA-207ENST00000571545 MRPS9P82933 396 aaKnown RBP11.18□□□□□ -0.62
CIITA-207ENST00000571545 RTN1Q16799 776 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 USP17L6PQ6QN14 398 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 HEATR3Q7Z4Q2 680 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 SERINC5Q86VE9 423 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 TNPO1Q92973 898 aaKnown RBP11.18□□□□□ -0.62
CIITA-207ENST00000571545 ATP6V0A1Q93050 837 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 CCDC136Q96JN2 1154 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 C16orf70Q9BSU1 422 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 PRDM12Q9H4Q4 367 aa11.18□□□□□ -0.62
CIITA-207ENST00000571545 CUL9Q8IWT3 2517 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 GTPBP6O43824 516 aaPredicted RBP11.17□□□□□ -0.62
CIITA-207ENST00000571545 RXRAP19793 462 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 HOXC8P31273 242 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 SP2Q02086 613 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 MTMR1Q13613 665 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 IKBKEQ14164 716 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 MCTP2Q6DN12 878 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 CYFIP1Q7L576 1253 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 HERC6Q8IVU3 1022 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 DHX38Q92620 1227 aaKnown RBP11.17□□□□□ -0.62
CIITA-207ENST00000571545 CTAGE1Q96RT6 745 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 GPR20Q99678 358 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 RTEL1Q9NZ71 1219 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 YBX2Q9Y2T7 364 aaKnown RBP11.17□□□□□ -0.62
CIITA-207ENST00000571545 TET1Q8NFU7 2136 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 DOCK5Q9H7D0 1870 aa11.17□□□□□ -0.62
CIITA-207ENST00000571545 CNTNAP5Q8WYK1 1306 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 NRCAMQ92823 1304 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 GOLGA8AA7E2F4 631 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 GOLGA8BA8MQT2 603 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 EPB41L2O43491 1005 aaKnown RBP11.16□□□□□ -0.62
CIITA-207ENST00000571545 TLL1O43897 1013 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 CA3P07451 260 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 SMIM10L2AP0DMW4 78 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 SMIM10L2BP0DMW5 78 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 IGFBP4P22692 258 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 ADCY7P51828 1080 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 RABGGTBP53611 331 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 NAPAP54920 295 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 WDR5P61964 334 aaKnown RBP11.16□□□□□ -0.62
CIITA-207ENST00000571545 AP3B2Q13367 1082 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 TAF2Q6P1X5 1199 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 RSPH3Q86UC2 560 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 CCDC12Q8WUD4 166 aaPredicted RBP11.16□□□□□ -0.62
CIITA-207ENST00000571545 ATXN2LQ8WWM7 1075 aaKnown RBP11.16□□□□□ -0.62
CIITA-207ENST00000571545 APBB2Q92870 758 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 VWCEQ96DN2 955 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 ZBED2Q9BTP6 218 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 LRRC2Q9BYS8 371 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 ERAP1Q9NZ08 941 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 THEGQ9P2T0 379 aa11.16□□□□□ -0.62
CIITA-207ENST00000571545 MICAL3Q7RTP6 2002 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 RSPH10B2B2RC85 870 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 SORBS3O60504 671 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 NBNO60934 754 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 LGR5O75473 907 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 AMHP03971 560 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 NEFLP07196 543 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 RSPH10BP0C881 870 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 PSMA5P28066 241 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 THPOP40225 353 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 EXOSC10Q01780 885 aaKnown RBP11.15□□□□□ -0.62
CIITA-207ENST00000571545 SEMA3FQ13275 785 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 AAK1Q2M2I8 961 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 TRIM71Q2Q1W2 868 aaKnown RBP11.15□□□□□ -0.62
CIITA-207ENST00000571545 TJAP1Q5JTD0 557 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 ZNF618Q5T7W0 954 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 CMTR1Q8N1G2 835 aaKnown RBP11.15□□□□□ -0.62
CIITA-207ENST00000571545 CCDC82Q8N4S0 544 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 IL27Q8NEV9 243 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 PPP1R13LQ8WUF5 828 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 SEPT1Q8WYJ6 367 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 GPKOWQ92917 476 aaPredicted RBP eCLIP11.15□□□□□ -0.62
CIITA-207ENST00000571545 SDF4Q9BRK5 362 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 RIC8AQ9NPQ8 531 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 PCDHA6Q9UN73 950 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 PCDHA8Q9Y5H6 950 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 UBIAD1Q9Y5Z9 338 aa11.15□□□□□ -0.62
CIITA-207ENST00000571545 KLF18A0A0U1RQI7 1052 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 HAX1O00165 279 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 KCNA2P16389 499 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 POU3F3P20264 500 aaPredicted RBP11.14□□□□□ -0.63
CIITA-207ENST00000571545 TCF7P36402 384 aaPredicted RBP11.14□□□□□ -0.63
CIITA-207ENST00000571545 METAP2P50579 478 aaKnown RBP eCLIP11.14□□□□□ -0.63
CIITA-207ENST00000571545 WWC2Q6AWC2 1192 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 BLOC1S2Q6QNY1 142 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms