RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 COL24A1Q17RW2 1714 aa9.7□□□□□ -0.86
LINC00558-201ENST00000569422 DDX60LQ5H9U9 1706 aaKnown RBP9.7□□□□□ -0.86
LINC00558-201ENST00000569422 SFI1A8K8P3 1242 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 ZNF263O14978 683 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 CHMP2AO43633 222 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 MOCS3O95396 460 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PLA2G4BP0C869 781 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 FECHP22830 423 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 ZNF76P36508 570 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 JAG1P78504 1218 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PDIA5Q14554 519 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 TMC4Q7Z404 712 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 IFIH1Q9BYX4 1025 aaKnown RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 TTYH3Q9C0H2 523 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 SMARCAL1Q9NZC9 954 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 ARHGAP20Q9P2F6 1191 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PI4KBQ9UBF8 816 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 DLEC1Q9Y238 1755 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 hCG_1984214I3L0E3 225 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 BUB1O43683 1085 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 MED24O75448 989 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 SCP2P22307 547 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 EPS15P42566 896 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 TNNT3P45378 269 aaPredicted RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 NOVP48745 357 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GFPT1Q06210 699 aaPredicted RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 ABCB5Q2M3G0 1257 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 HHIPL2Q6UWX4 724 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GSPT2Q8IYD1 628 aaKnown RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 ZNF713Q8N859 430 aaPredicted RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 NEK11Q8NG66 645 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 P2RX7Q99572 595 aaKnown RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 FUT8Q9BYC5 575 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PDE11AQ9HCR9 933 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PVALEFA0A1B0GWK0 134 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 KLRG2A4D1S0 409 aaPredicted RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GOLGA6CA6NDK9 693 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GOLGA6BA6NDN3 693 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 SPDYE3A6NKU9 549 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GOLGA6DP0CG33 693 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 MAP2K1Q02750 393 aaPredicted RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 MAN2A1Q16706 1144 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PTPROQ16827 1216 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 PPP4R3AQ6IN85 833 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 DNAAF5Q86Y56 855 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GUF1Q8N442 669 aaKnown RBP9.69□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC102AQ96A19 550 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 GOLGA6AQ9NYA3 693 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 FAM53CQ9NYF3 392 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 NAV1Q8NEY1 1877 aa9.69□□□□□ -0.86
LINC00558-201ENST00000569422 H0YIN7 160 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 N4BP1O75113 896 aaKnown RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 PPFIA4O75335 1185 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CFBP00751 764 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 ECE1P42892 770 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CLK2P49760 499 aaKnown RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 KIF11P52732 1056 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 POLR2FP61218 127 aaKnown RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 ARHGAP4P98171 946 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 RASSF7Q02833 373 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 WHAMMP3Q1A5X7 153 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC174Q6PII3 467 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 PODNQ7Z5L7 613 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 DNAJC19Q96DA6 116 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CSRNP1Q96S65 589 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 EHD2Q9NZN4 543 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CAPN6Q9Y6Q1 641 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 ZC3H4Q9UPT8 1303 aaKnown RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC151A5D8V7 595 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 NCK2O43639 380 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 NDUFB10O96000 172 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 RNASE9P60153 205 aaKnown RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 C2orf54Q08AI8 447 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 TCERG1LQ5VWI1 586 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC84Q86UT8 332 aaPredicted RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 SIAH1Q8IUQ4 282 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 TBC1D5Q92609 795 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 PRMT6Q96LA8 375 aaPredicted RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC17Q96LX7 622 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 ERGIC2Q96RQ1 377 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 LSM14BQ9BX40 385 aaKnown RBP9.68□□□□□ -0.86
LINC00558-201ENST00000569422 SBF2Q86WG5 1849 aa9.68□□□□□ -0.86
LINC00558-201ENST00000569422 NHSQ6T4R5 1651 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MEIS2O14770 477 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 FGFR1OPO95684 399 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 CASP5P51878 434 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 AMPD2Q01433 879 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 ADAM9Q13443 819 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MEA1Q16626 185 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 KCTD19Q17RG1 926 aaPredicted RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 TMEM119Q4V9L6 283 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 LRRC55Q6ZSA7 311 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 FBXO11Q86XK2 927 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC65Q8IXS2 484 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 PIGOQ8TEQ8 1089 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 ZDHHC15Q96MV8 337 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 EMILIN3Q9NT22 766 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RGL1Q9NZL6 768 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 PKD2L1Q9P0L9 805 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms