RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	FGR	P09769	529 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	SMIM10L2A	P0DMW4	78 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	SMIM10L2B	P0DMW5	78 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	SNHG28	P0DPA3	235 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	AVPR2	P30518	371 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	BTG3	Q14201	252 aa	Predicted RBP	18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	CELF3	Q5SZQ8	465 aa	Known RBP	18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	GPATCH4	Q5T3I0	446 aa	Known RBP	18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	PPP2R3C	Q969Q6	453 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	MSLNL	Q96KJ4	702 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	RPGRIP1	Q96KN7	1286 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	C16orf70	Q9BSU1	422 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	MAF1	Q9H063	256 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	RNPEP	Q9H4A4	650 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	PXMP2	Q9NR77	195 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	TLR9	Q9NR96	1032 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	MYH7B	A7E2Y1	1941 aa		18.91	■□□□□ 0.62
CLK3-223	ENST00000568488	RALGAPA2	Q2PPJ7	1873 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	LOC730098	B7Z3J9	87 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488		H3BRB1	525 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	EYA4	O95677	639 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	HSPD1	P10809	573 aa	Known RBP	18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	HOXD8	P13378	290 aa	Predicted RBP	18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	RRP1	P56182	461 aa	Known RBP	18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	SIGLEC14	Q08ET2	396 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	TTC14	Q96N46	770 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	TUT1	Q9H6E5	874 aa	Known RBP	18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	MLXIP	Q9HAP2	919 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	MRPL11	Q9Y3B7	192 aa	Known RBP	18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	ADGRA3	Q8IWK6	1321 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	ZDBF2	Q9HCK1	2354 aa		18.9	■□□□□ 0.62
CLK3-223	ENST00000568488	COL4A6	Q14031	1691 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	DHX16	O60231	1041 aa	Known RBP	18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	CAND2	O75155	1236 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	MMP1	P03956	469 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	LINC00271	P0C7V0	271 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	KCNV1	Q6PIU1	500 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	VAT1L	Q9HCJ6	419 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	SETD4	Q9NVD3	440 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	CLEC1B	Q9P126	229 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	PLAGL2	Q9UPG8	496 aa		18.89	■□□□□ 0.61
CLK3-223	ENST00000568488	CAMK1	Q14012	370 aa		18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	RBM23	Q86U06	439 aa	Known RBP	18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	ADGRF4	Q8IZF3	695 aa		18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	CLP1	Q92989	425 aa	Known RBP	18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	ZFP91	Q96JP5	570 aa	Predicted RBP	18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	PLVAP	Q9BX97	442 aa		18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	ATG2A	Q2TAZ0	1938 aa		18.88	■□□□□ 0.61
CLK3-223	ENST00000568488	RGS20	O76081	388 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	FGA	P02671	866 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	GNAT1	P11488	350 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	NRIP1	P48552	1158 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	HAND2	P61296	217 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	SP2	Q02086	613 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	ALX1	Q15699	326 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	QRICH1	Q2TAL8	776 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	TTC41P	Q6P2S7	1318 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	ADGRD2	Q7Z7M1	963 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	MIER1	Q8N108	512 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	SMRP1	Q8NCR6	262 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	PI4K2B	Q8TCG2	481 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	ZKSCAN3	Q9BRR0	538 aa		18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	USP15	Q9Y4E8	981 aa	Predicted RBP	18.87	■□□□□ 0.61
CLK3-223	ENST00000568488	KDM4A	O75164	1064 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	LGALS2	P05162	132 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	GHR	P10912	638 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	UBA1	P22314	1058 aa	Known RBP	18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	DNAJB1	P25685	340 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	HOXC8	P31273	242 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	CBX2	Q14781	532 aa	Predicted RBP	18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	ASCL5	Q7RTU5	278 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	EFHB	Q8N7U6	833 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	ASIC4	Q96FT7	647 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	PHF7	Q9BWX1	381 aa	Predicted RBP	18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	DCTPP1	Q9H773	170 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	BARX2	Q9UMQ3	279 aa	Predicted RBP	18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	KMT2E	Q8IZD2	1858 aa		18.86	■□□□□ 0.61
CLK3-223	ENST00000568488	PTPRZ1	P23471	2315 aa	Predicted RBP	18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	CCDC171	Q6TFL3	1326 aa		18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	NOP56	O00567	594 aa	Known RBP	18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	ENPP3	O14638	875 aa		18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	ARHGAP4	P98171	946 aa		18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	COASY	Q13057	564 aa		18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	MFSD6	Q6ZSS7	791 aa		18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	PDCD2L	Q9BRP1	358 aa		18.85	■□□□□ 0.61
CLK3-223	ENST00000568488	SPTBN4	Q9H254	2564 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	TGFB3	P10600	412 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	FAM26D	Q5JW98	314 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	ZBTB33	Q86T24	672 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	SPPL3	Q8TCT6	385 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	OTUD7A	Q8TE49	926 aa	Predicted RBP	18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	P2RX5	Q93086	422 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	ZNF689	Q96CS4	500 aa	Predicted RBP	18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	BCAS3	Q9H6U6	928 aa		18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	RC3H2	Q9HBD1	1191 aa	Known RBP	18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.84	■□□□□ 0.61
CLK3-223	ENST00000568488	CHRNA1	P02708	482 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	ITGB1	P05556	798 aa		18.83	■□□□□ 0.6
CLK3-223	ENST00000568488	ICAM3	P32942	547 aa		18.83	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms