RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 GJB5O95377 273 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 LGALS2P05162 132 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 CALM1P0DP23 149 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 CALM2P0DP24 149 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 CALM3P0DP25 149 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 GNAT1P11488 350 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 ZNF200P98182 395 aaPredicted RBP19.43■□□□□ 0.7
CLN3-231ENST00000568422 PCNX4Q63HM2 1172 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 ATP6V0A1Q93050 837 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 WNT8BQ93098 351 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 SENP7Q9BQF6 1050 aa19.43■□□□□ 0.7
CLN3-231ENST00000568422 COL4A4P53420 1690 aaPredicted RBP19.43■□□□□ 0.7
CLN3-231ENST00000568422 MICAL3Q7RTP6 2002 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 KAT6AQ92794 2004 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 EPOPA6NHQ4 379 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 RSPH10B2B2RC85 870 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 PRC1O43663 620 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 RSPH10BP0C881 870 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 THPOP40225 353 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 DEFB103AP81534 67 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 HIC1Q14526 733 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 SKIV2LQ15477 1246 aaKnown RBP19.42■□□□□ 0.7
CLN3-231ENST00000568422 GIMAP8Q8ND71 665 aaPredicted RBP19.42■□□□□ 0.7
CLN3-231ENST00000568422 PIBF1Q8WXW3 757 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 ZFP91Q96JP5 570 aaPredicted RBP19.42■□□□□ 0.7
CLN3-231ENST00000568422 LMCD1Q9NZU5 365 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 ZNF215Q9UL58 517 aaPredicted RBP19.42■□□□□ 0.7
CLN3-231ENST00000568422 COG5Q9UP83 839 aa19.42■□□□□ 0.7
CLN3-231ENST00000568422 SIP14410 1827 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 CCDC69A6NI79 296 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 ARHGEF15O94989 841 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 SMIM10L2AP0DMW4 78 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 SMIM10L2BP0DMW5 78 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 LIFRP42702 1097 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 MBTPS1Q14703 1052 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 NFXL1Q6ZNB6 911 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 CYFIP1Q7L576 1253 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 NLRX1Q86UT6 975 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 UHRF1Q96T88 793 aaPredicted RBP19.41■□□□□ 0.7
CLN3-231ENST00000568422 GPR20Q99678 358 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 MYL10Q9BUA6 226 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 RTEL1Q9NZ71 1219 aa19.41■□□□□ 0.7
CLN3-231ENST00000568422 MEIS2O14770 477 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 IRX6P78412 446 aaPredicted RBP19.4■□□□□ 0.7
CLN3-231ENST00000568422 SEMA3FQ13275 785 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 GRB10Q13322 594 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 TCTN1Q2MV58 587 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 USP17L6PQ6QN14 398 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 CDHR1Q96JP9 859 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 TGS1Q96RS0 853 aaKnown RBP19.4■□□□□ 0.7
CLN3-231ENST00000568422 LSG1Q9H089 658 aaKnown RBP19.4■□□□□ 0.7
CLN3-231ENST00000568422 RNPEPQ9H4A4 650 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 BCAS3Q9H6U6 928 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 PSTPIP2Q9H939 334 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 INSL6Q9Y581 213 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 NCOR1O75376 2440 aa19.4■□□□□ 0.7
CLN3-231ENST00000568422 TCF20Q9UGU0 1960 aaKnown RBP19.39■□□□□ 0.7
CLN3-231ENST00000568422 LCHNA4D1U4 455 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 SH2B2O14492 632 aaPredicted RBP19.39■□□□□ 0.69
CLN3-231ENST00000568422 TREHO43280 583 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 AMHP03971 560 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 BMP1P13497 986 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 ERVK-21P61565 698 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 PLEKHG4Q58EX7 1191 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 TMCO2Q7Z6W1 182 aaPredicted RBP19.39■□□□□ 0.69
CLN3-231ENST00000568422 SRBD1Q8N5C6 995 aaKnown RBP19.39■□□□□ 0.69
CLN3-231ENST00000568422 DBF4BQ8NFT6 615 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 GPRASP2Q96D09 838 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 ESYT1Q9BSJ8 1104 aa19.39■□□□□ 0.69
CLN3-231ENST00000568422 BDP1A6H8Y1 2624 aa19.38■□□□□ 0.69
CLN3-231ENST00000568422 SLC27A2O14975 620 aa19.38■□□□□ 0.69
CLN3-231ENST00000568422 LPXNO60711 386 aa19.38■□□□□ 0.69
CLN3-231ENST00000568422 MKRN4PQ13434 485 aaPredicted RBP19.38■□□□□ 0.69
CLN3-231ENST00000568422 NECTIN1Q15223 517 aa19.38■□□□□ 0.69
CLN3-231ENST00000568422 SEPT8Q92599 483 aa19.38■□□□□ 0.69
CLN3-231ENST00000568422 SLC12A7Q9Y666 1083 aa19.38■□□□□ 0.69
CLN3-231ENST00000568422 LINC01553A4QN01 128 aa19.37■□□□□ 0.69
CLN3-231ENST00000568422 PLEKHA8P1O95397 391 aa19.37■□□□□ 0.69
CLN3-231ENST00000568422 TFF2Q03403 129 aa19.37■□□□□ 0.69
CLN3-231ENST00000568422 KRT40Q6A162 431 aa19.37■□□□□ 0.69
CLN3-231ENST00000568422 HLA-CQ95604 372 aa19.37■□□□□ 0.69
CLN3-231ENST00000568422 NRCAMQ92823 1304 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 MAFGO15525 162 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 RNF20Q5VTR2 975 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 CREB3L3Q68CJ9 461 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLN3-231ENST00000568422 SGMS1Q86VZ5 419 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 TEX2Q8IWB9 1127 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 FANCBQ8NB91 859 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 APBB2Q92870 758 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 SUGCTQ9HAC7 445 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 SETD4Q9NVD3 440 aa19.36■□□□□ 0.69
CLN3-231ENST00000568422 ADAM17P78536 824 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 HTRA4P83105 476 aaPredicted RBP19.35■□□□□ 0.69
CLN3-231ENST00000568422 FAM26DQ5JW98 314 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 UTP14CQ5TAP6 766 aaKnown RBP19.35■□□□□ 0.69
CLN3-231ENST00000568422 FAM117BQ6P1L5 589 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 SYNE3Q6ZMZ3 975 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 SPRED2Q7Z698 418 aa19.35■□□□□ 0.69
CLN3-231ENST00000568422 MYOCDQ8IZQ8 938 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms