RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	CTSH	P09668	335 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	NOV	P48745	357 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	CBX2	Q14781	532 aa	Predicted RBP	13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	PPP4R3B	Q5MIZ7	849 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	TSHZ3	Q63HK5	1081 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	ERMP1	Q7Z2K6	904 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	ADGRD2	Q7Z7M1	963 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	RPGRIP1	Q96KN7	1286 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	NACAP1	Q9BZK3	213 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	NAPB	Q9H115	298 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	COL20A1	Q9P218	1284 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	PLXNA3	P51805	1871 aa		13.84	□□□□□ -0.19
CLK3-222	ENST00000568232	NLRC5	Q86WI3	1866 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	PRR23A	A6NEV1	266 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	HMMR	O75330	724 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	DNAJB1	P25685	340 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	VASP	P50552	380 aa	Predicted RBP	13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	SMRP1	Q8NCR6	262 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	PPTC7	Q8NI37	304 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	ATP6V0A1	Q93050	837 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	IRF2BPL	Q9H1B7	796 aa		13.83	□□□□□ -0.2
CLK3-222	ENST00000568232	TREH	O43280	583 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	KDM4A	O75164	1064 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	MMP1	P03956	469 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	ID4	P47928	161 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	LAMC2	Q13753	1193 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	STXBP2	Q15833	593 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	EMID1	Q96A84	441 aa	Predicted RBP	13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	TMEM47	Q9BQJ4	181 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	CPVL	Q9H3G5	476 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	ECHDC1	Q9NTX5	307 aa		13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	BARX2	Q9UMQ3	279 aa	Predicted RBP	13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	USP15	Q9Y4E8	981 aa	Predicted RBP	13.82	□□□□□ -0.2
CLK3-222	ENST00000568232	C17orf102	A2RUQ5	167 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	ZFY	P08048	801 aa	Predicted RBP	13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	COASY	Q13057	564 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	HSDL1	Q3SXM5	330 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	RBM23	Q86U06	439 aa	Known RBP	13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	RGS22	Q8NE09	1264 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	NSUN6	Q8TEA1	469 aa	Known RBP	13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	CLP1	Q92989	425 aa	Known RBP	13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	RC3H2	Q9HBD1	1191 aa	Known RBP	13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	METRN	Q9UJH8	293 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	PLAGL2	Q9UPG8	496 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	MRVI1	Q9Y6F6	885 aa		13.81	□□□□□ -0.2
CLK3-222	ENST00000568232	RALGAPA2	Q2PPJ7	1873 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	CACNA1H	O95180	2353 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	FOXP2	O15409	715 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	PPFIA4	O75335	1185 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	GLP2R	O95838	553 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	PDHB	P11177	359 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	TOP1	P11387	765 aa	Known RBP	13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	HOXD8	P13378	290 aa	Predicted RBP	13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	EIF2AK2	P19525	551 aa	Known RBP	13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	NRIP1	P48552	1158 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	RBM10	P98175	930 aa	Known RBP	13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	EFHB	Q8N7U6	833 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	RMDN3	Q96TC7	470 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	C16orf70	Q9BSU1	422 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	PHF7	Q9BWX1	381 aa	Predicted RBP	13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	LRRCC1	Q9C099	1032 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	PCDHGC5	Q9Y5F6	944 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	DNAH14	Q0VDD8	3507 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	ADGRA3	Q8IWK6	1321 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	WDR19	Q8NEZ3	1342 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	PTPRZ1	P23471	2315 aa	Predicted RBP	13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	DMXL1	Q9Y485	3027 aa		13.8	□□□□□ -0.2
CLK3-222	ENST00000568232	GOLGA8H	P0CJ92	632 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	SMIM10L2A	P0DMW4	78 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	SMIM10L2B	P0DMW5	78 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	ICAM3	P32942	547 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	NBL1	P41271	181 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	ZNF543	Q08ER8	600 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	BTG3	Q14201	252 aa	Predicted RBP	13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	PTPN21	Q16825	1174 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	MYSM1	Q5VVJ2	828 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	RIPOR3	Q96MK2	946 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	SPATA33	Q96N06	139 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	IWS1	Q96ST2	819 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	UBA5	Q9GZZ9	404 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	RNPEP	Q9H4A4	650 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	PNMA2	Q9UL42	364 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	RWDD3	Q9Y3V2	267 aa		13.79	□□□□□ -0.2
CLK3-222	ENST00000568232	EIF3J	O75822	258 aa	Known RBP	13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	ITGB1	P05556	798 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	HOXC8	P31273	242 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	SP2	Q02086	613 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	RRP12	Q5JTH9	1297 aa	Known RBP	13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	ARHGEF16	Q5VV41	709 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	FRMD5	Q7Z6J6	570 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	SPPL3	Q8TCT6	385 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	APBB2	Q92870	758 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	ZNF689	Q96CS4	500 aa	Predicted RBP	13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	BCAS3	Q9H6U6	928 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	TOMM22	Q9NS69	142 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	ZBTB40	Q9NUA8	1239 aa		13.78	□□□□□ -0.2
CLK3-222	ENST00000568232	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.78	□□□□□ -0.2
CLK3-222	ENST00000568232		H3BRB1	525 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	GGPS1	O95749	300 aa		13.77	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms