RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 GRIA2P42262 883 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 GPR85P60893 370 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 NBPF6Q5VWK0 638 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 VASNQ6EMK4 673 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 DENND5AQ6IQ26 1287 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 ARRDC4Q8NCT1 418 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 CHST13Q8NET6 341 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 TTLL11Q8NHH1 800 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.54□□□□□ -1.68
VPS35-207ENST00000568191 C1orf159Q96HA4 380 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 NBPF4Q96M43 638 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 HIRIP3Q9BW71 556 aaPredicted RBP4.54□□□□□ -1.68
VPS35-207ENST00000568191 JAM3Q9BX67 310 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 BARX1Q9HBU1 254 aaPredicted RBP4.54□□□□□ -1.68
VPS35-207ENST00000568191 ASH2LQ9UBL3 628 aa4.54□□□□□ -1.68
VPS35-207ENST00000568191 ARNTLO00327 626 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 AQP7O14520 342 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 PLATP00750 562 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 ITGB3P05106 788 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 GRK2P25098 689 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 GRK3P35626 688 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 EFEMP1Q12805 493 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 MTERF2Q49AM1 385 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 LBX2Q6XYB7 198 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 SCUBE1Q8IWY4 988 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 PIP4K2CQ8TBX8 421 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 LOXL4Q96JB6 756 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 SPATA9Q9BWV2 254 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 TANGO6Q9C0B7 1094 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 JADE2Q9NQC1 790 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 HSPBP1Q9NZL4 362 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 FBXL7Q9UJT9 491 aa4.53□□□□□ -1.68
VPS35-207ENST00000568191 GSTA4O15217 222 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 PDPK1O15530 556 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 CAPNS1P04632 268 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 CHGBP05060 677 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 ENO2P09104 434 aaPredicted RBP4.52□□□□□ -1.69
VPS35-207ENST00000568191 MAGEA10P43363 369 aaPredicted RBP4.52□□□□□ -1.69
VPS35-207ENST00000568191 ADAM9Q13443 819 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 ZXDCQ2QGD7 858 aaPredicted RBP4.52□□□□□ -1.69
VPS35-207ENST00000568191 NAALADL2Q58DX5 795 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 LCE5AQ5TCM9 118 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 STYK1Q6J9G0 422 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 TRMT10BQ6PF06 316 aaKnown RBP4.52□□□□□ -1.69
VPS35-207ENST00000568191 OTOP3Q7RTS5 596 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 NLGN4XQ8N0W4 816 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 SAMD11Q96NU1 681 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 KCNJ15Q99712 375 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 DLL4Q9NR61 685 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 SMPD4Q9NXE4 827 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 SIRPGQ9P1W8 387 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 DSEQ9UL01 958 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 INVSQ9Y283 1065 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 DUSP10Q9Y6W6 482 aa4.52□□□□□ -1.69
VPS35-207ENST00000568191 SLC27A2O14975 620 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 LRG1P02750 347 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 SOD2P04179 222 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 GRIN1Q05586 938 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 SSRP1Q08945 709 aaKnown RBP4.51□□□□□ -1.69
VPS35-207ENST00000568191 PAK1Q13153 545 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 TUSC3Q13454 348 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 RASGRF1Q13972 1273 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 PRR31Q5SQ13 230 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 SOGA3Q5TF21 947 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 TMC5Q6UXY8 1006 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 ARHGEF18Q6ZSZ5 1173 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 MAMDC2Q7Z304 686 aaPredicted RBP4.51□□□□□ -1.69
VPS35-207ENST00000568191 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.51□□□□□ -1.69
VPS35-207ENST00000568191 MTDHQ86UE4 582 aaKnown RBP4.51□□□□□ -1.69
VPS35-207ENST00000568191 KLHL36Q8N4N3 616 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 TTC9BQ8N6N2 239 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 UHMK1Q8TAS1 419 aaKnown RBP4.51□□□□□ -1.69
VPS35-207ENST00000568191 OSBP2Q969R2 916 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 ZSWIM3Q96MP5 696 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 KRTAP17-1Q9BYP8 105 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 CCDC113Q9H0I3 377 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 ARHGEF4Q9NR80 690 aa4.51□□□□□ -1.69
VPS35-207ENST00000568191 NPEPPSL1A6NEC2 478 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 CCDC85CA6NKD9 419 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 LAMTOR5O43504 91 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 MSCO60682 206 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 COL6A2P12110 1019 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 FAHP16930 419 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 ZNF28P17035 718 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 SUMO1P63165 101 aaKnown RBP4.5□□□□□ -1.69
VPS35-207ENST00000568191 ST5P78524 1137 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 TBC1D10BQ4KMP7 808 aaPredicted RBP4.5□□□□□ -1.69
VPS35-207ENST00000568191 PAN2Q504Q3 1202 aaKnown RBP4.5□□□□□ -1.69
VPS35-207ENST00000568191 ZC3H12BQ5HYM0 836 aaKnown RBP4.5□□□□□ -1.69
VPS35-207ENST00000568191 KCNT2Q6UVM3 1135 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 HHIPL2Q6UWX4 724 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 DPP8Q6V1X1 898 aaPredicted RBP4.5□□□□□ -1.69
VPS35-207ENST00000568191 PTPRN2Q92932 1015 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 YTHDC1Q96MU7 727 aaKnown RBP4.5□□□□□ -1.69
VPS35-207ENST00000568191 SYT3Q9BQG1 590 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 CATSPERZQ9NTU4 200 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 PODXL2Q9NZ53 605 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 ARHGAP20Q9P2F6 1191 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 MYRFQ9Y2G1 1151 aa4.5□□□□□ -1.69
VPS35-207ENST00000568191 ZDHHC9Q9Y397 364 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms