RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 EXOSC10Q01780 885 aaKnown RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 SMAD4Q13485 552 aaKnown RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 BAATQ14032 418 aaPredicted RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 WTAPQ15007 396 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 SART3Q15020 963 aaKnown RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 RABEP1Q15276 862 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 Q6ZUG5 572 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 MYOCDQ8IZQ8 938 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 ENAHQ8N8S7 591 aaPredicted RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 ATOH1Q92858 354 aaPredicted RBP13.11□□□□□ -0.31
CLN3-226ENST00000567160 YME1L1Q96TA2 773 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 STX8Q9UNK0 236 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 WDR19Q8NEZ3 1342 aa13.11□□□□□ -0.31
CLN3-226ENST00000567160 PTPDC1A2A3K4 754 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 MBTPS2O43462 519 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 LGR5O75473 907 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 ICAM1P05362 532 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 TXNP10599 105 aaKnown RBP13.1□□□□□ -0.31
CLN3-226ENST00000567160 NT5C2P49902 561 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 FBXO11Q86XK2 927 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 TMEM192Q8IY95 271 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 C7orf31Q8N865 590 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 DHX38Q92620 1227 aaKnown RBP13.1□□□□□ -0.31
CLN3-226ENST00000567160 TMEM87BQ96K49 555 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 PURBQ96QR8 312 aaKnown RBP13.1□□□□□ -0.31
CLN3-226ENST00000567160 CTAGE1Q96RT6 745 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 SENP2Q9HC62 589 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 TCP11L1Q9NUJ3 509 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 FAM86C1Q9NVL1 165 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 PRR12Q9ULL5 1215 aa13.1□□□□□ -0.31
CLN3-226ENST00000567160 COL4A6Q14031 1691 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 SH2B2O14492 632 aaPredicted RBP13.09□□□□□ -0.31
CLN3-226ENST00000567160 LTBRP36941 435 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 PTK7Q13308 1070 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 SEC23AQ15436 765 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 CLUL1Q15846 466 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 TCTN1Q2MV58 587 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 CTC1Q2NKJ3 1217 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 CCDC178Q5BJE1 867 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 IFIT1BQ5T764 474 aaKnown RBP13.09□□□□□ -0.31
CLN3-226ENST00000567160 RCSD1Q6JBY9 416 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.09□□□□□ -0.31
CLN3-226ENST00000567160 NFXL1Q6ZNB6 911 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 IGDCC4Q8TDY8 1250 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 CHMP4CQ96CF2 233 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 LARP6Q9BRS8 491 aaKnown RBP13.09□□□□□ -0.31
CLN3-226ENST00000567160 KATNAL1Q9BW62 490 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 LY9Q9HBG7 655 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 GTF2IRD1Q9UHL9 959 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 MTMR7Q9Y216 660 aa13.09□□□□□ -0.31
CLN3-226ENST00000567160 FAM186AA6NE01 2351 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 MMP3P08254 477 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 CALML3P27482 149 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 AK2P54819 239 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 SNAP25P60880 206 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 ZXDAP98168 799 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 APOBRQ0VD83 1088 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 KCTD1Q719H9 257 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 DNERQ8NFT8 737 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 COPS5Q92905 334 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 BRF1Q92994 677 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 TTC14Q96N46 770 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 TMEM47Q9BQJ4 181 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 LMAN2LQ9H0V9 348 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 KAT14Q9H8E8 782 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 CD207Q9UJ71 328 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 PNMA2Q9UL42 364 aa13.08□□□□□ -0.32
CLN3-226ENST00000567160 NAP1L2Q9ULW6 460 aaPredicted RBP13.08□□□□□ -0.32
CLN3-226ENST00000567160 RIF1Q5UIP0 2472 aaKnown RBP13.08□□□□□ -0.32
CLN3-226ENST00000567160 CCDC69A6NI79 296 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 TOP1P11387 765 aaKnown RBP13.07□□□□□ -0.32
CLN3-226ENST00000567160 NUBP1P53384 320 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 TOB2Q14106 344 aaPredicted RBP13.07□□□□□ -0.32
CLN3-226ENST00000567160 ZNF618Q5T7W0 954 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 DGKHQ86XP1 1220 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 RAB11FIP4Q86YS3 637 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 AFG1LQ8WV93 481 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 MTA3Q9BTC8 594 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 C11orf84Q9BUA3 381 aaPredicted RBP13.07□□□□□ -0.32
CLN3-226ENST00000567160 RWDD3Q9Y3V2 267 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 ATG2AQ2TAZ0 1938 aa13.07□□□□□ -0.32
CLN3-226ENST00000567160 BAZ2BQ9UIF8 2168 aaKnown RBP13.06□□□□□ -0.32
CLN3-226ENST00000567160 KLF18A0A0U1RQI7 1052 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 PROB1E7EW31 1015 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 NFIBO00712 420 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 GH1P01241 217 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 RB1P06400 928 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 EDNRBP24530 442 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 LIFRP42702 1097 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 NOVP48745 357 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 SIGLEC14Q08ET2 396 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 HYAL1Q12794 435 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 DGKDQ16760 1214 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 SLC30A10Q6XR72 485 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 RNF207Q6ZRF8 634 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 PNMA1Q8ND90 353 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 DBF4BQ8NFT6 615 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 TOP1MTQ969P6 601 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 PPP2R3CQ969Q6 453 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 MYL10Q9BUA6 226 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms