RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CYP2W1Q8TAV3 490 aa14.77□□□□□ -0.05
NEDD8-208ENST00000560427 TNFRSF25Q93038 417 aa14.77□□□□□ -0.05
NEDD8-208ENST00000560427 FERMT2Q96AC1 680 aa14.77□□□□□ -0.05
NEDD8-208ENST00000560427 INTS4Q96HW7 963 aaKnown RBP14.77□□□□□ -0.05
NEDD8-208ENST00000560427 MBOAT7Q96N66 472 aa14.77□□□□□ -0.05
NEDD8-208ENST00000560427 FOXP1Q9H334 677 aaPredicted RBP14.77□□□□□ -0.05
NEDD8-208ENST00000560427 AGO4Q9HCK5 861 aaKnown RBP14.77□□□□□ -0.05
NEDD8-208ENST00000560427 JPH1Q9HDC5 661 aaPredicted RBP14.77□□□□□ -0.05
NEDD8-208ENST00000560427 NR2E3Q9Y5X4 410 aa14.77□□□□□ -0.05
NEDD8-208ENST00000560427 ARVCFO00192 962 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 EVI5O60447 810 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 DTNBO60941 627 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 ATP9AO75110 1047 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 F2P00734 622 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 MYL3P08590 195 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 GJB2P29033 226 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 ATN1P54259 1190 aaPredicted RBP14.76□□□□□ -0.05
NEDD8-208ENST00000560427 RTP1P59025 263 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 INF2Q27J81 1249 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 PRR16Q569H4 304 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 PIK3AP1Q6ZUJ8 805 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 ANKRD33Q7Z3H0 272 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 HSCBQ8IWL3 235 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 SLC43A3Q8NBI5 491 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 OXER1Q8TDS5 423 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 DPF3Q92784 378 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 LENG9Q96B70 501 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 TOX2Q96NM4 488 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 GPR20Q99678 358 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 ZNF577Q9BSK1 485 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 TBC1D22BQ9NU19 505 aa14.76□□□□□ -0.05
NEDD8-208ENST00000560427 MYH7BA7E2Y1 1941 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 BTBD18B2RXH4 712 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 IPO5O00410 1097 aaKnown RBP14.75□□□□□ -0.05
NEDD8-208ENST00000560427 EDIL3O43854 480 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 ARP10275 920 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 CDK7P50613 346 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 PTPN11Q06124 597 aaPredicted RBP14.75□□□□□ -0.05
NEDD8-208ENST00000560427 NR5A1Q13285 461 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 ITGA7Q13683 1181 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 NFRKBQ6P4R8 1299 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 VTI1AQ96AJ9 217 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 SLC9A2Q9UBY0 812 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 TCEAL9Q9UHQ7 104 aa14.75□□□□□ -0.05
NEDD8-208ENST00000560427 ZNF215Q9UL58 517 aaPredicted RBP14.75□□□□□ -0.05
NEDD8-208ENST00000560427 PDCP20941 246 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 FOSBP53539 338 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 ITGB3BPQ13352 177 aaPredicted RBP14.74□□□□□ -0.05
NEDD8-208ENST00000560427 ORC2Q13416 577 aaPredicted RBP14.74□□□□□ -0.05
NEDD8-208ENST00000560427 GNL2Q13823 731 aaKnown RBP14.74□□□□□ -0.05
NEDD8-208ENST00000560427 LETM2Q2VYF4 491 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 TRIM60Q495X7 471 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 SESTD1Q86VW0 696 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 SEPT1Q8WYJ6 367 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 RIT2Q99578 217 aa14.74□□□□□ -0.05
NEDD8-208ENST00000560427 DDX25Q9UHL0 483 aaKnown RBP14.74□□□□□ -0.05
NEDD8-208ENST00000560427 EMSYQ7Z589 1322 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 SCN10AQ9Y5Y9 1956 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 DCDC2CA8MYV0 355 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 TBX3O15119 743 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 TLR3O15455 904 aaKnown RBP14.73□□□□□ -0.05
NEDD8-208ENST00000560427 TDP2O95551 362 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 LGALS2P05162 132 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 U2AF2P26368 475 aaKnown RBP eCLIP14.73□□□□□ -0.051e-6■□□□□ 10.9
NEDD8-208ENST00000560427 TRAPPC10P48553 1259 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 KRT76Q01546 638 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 GUCY1B3Q02153 619 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 EARS2Q5JPH6 523 aaKnown RBP14.73□□□□□ -0.05
NEDD8-208ENST00000560427 ZNF746Q6NUN9 644 aaPredicted RBP14.73□□□□□ -0.05
NEDD8-208ENST00000560427 NOSTRINQ8IVI9 506 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 SMAP1Q8IYB5 467 aaPredicted RBP14.73□□□□□ -0.05
NEDD8-208ENST00000560427 KAT2BQ92831 832 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 SLC5A5Q92911 643 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 FAM20AQ96MK3 541 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 C16orf70Q9BSU1 422 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 PKD2L1Q9P0L9 805 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 ATP11BQ9Y2G3 1177 aa14.73□□□□□ -0.05
NEDD8-208ENST00000560427 ALPK3Q96L96 1907 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 GRIN2DO15399 1336 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 HAS3O00219 553 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 MSH4O15457 936 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 DHX15O43143 795 aaKnown RBP14.72□□□□□ -0.05
NEDD8-208ENST00000560427 CCNT1O60563 726 aaKnown RBP14.72□□□□□ -0.05
NEDD8-208ENST00000560427 PQBP1O60828 265 aaKnown RBP14.72□□□□□ -0.05
NEDD8-208ENST00000560427 SUPT20HL2P0C7V6 817 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 ZNF286BP0CG31 522 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 TCF7P36402 384 aaPredicted RBP14.72□□□□□ -0.05
NEDD8-208ENST00000560427 ACTR2P61160 394 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 MFSD10Q14728 455 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 FAM126BQ8IXS8 530 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 C7orf61Q8IZ16 206 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 ETNPPLQ8TBG4 499 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 BCAS3Q9H6U6 928 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 PRKAG2Q9UGJ0 569 aa14.72□□□□□ -0.05
NEDD8-208ENST00000560427 H3BQV1 296 aa14.71□□□□□ -0.05
NEDD8-208ENST00000560427 H3BRB1 525 aa14.71□□□□□ -0.05
NEDD8-208ENST00000560427 SORBS3O60504 671 aa14.71□□□□□ -0.05
NEDD8-208ENST00000560427 GAS7O60861 476 aa14.71□□□□□ -0.05
NEDD8-208ENST00000560427 LGR5O75473 907 aa14.71□□□□□ -0.05
NEDD8-208ENST00000560427 ATG7O95352 703 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms