RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 WDR11Q9BZH6 1224 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 NOD1Q9Y239 953 aa11.8□□□□□ -0.52
SCFD1-220ENST00000556486 ORC4O43929 436 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 RCSD1Q6JBY9 416 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 PHOSPHO2Q8TCD6 241 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 SNX27Q96L92 541 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 MTG1Q9BT17 334 aaPredicted RBP11.79□□□□□ -0.52
SCFD1-220ENST00000556486 SEZ6LQ9BYH1 1024 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 SUGCTQ9HAC7 445 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 VTA1Q9NP79 307 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 IL17RBQ9NRM6 502 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 HCSTQ9UBK5 93 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 CCPG1Q9ULG6 757 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 ZMYM6O95789 1325 aa11.79□□□□□ -0.52
SCFD1-220ENST00000556486 LOC102724159A0A0B4J2E5 919 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 RFC2P35250 354 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 CPT1AP50416 773 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 ALDH5A1P51649 535 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-220ENST00000556486 BAATQ14032 418 aaPredicted RBP11.78□□□□□ -0.52
SCFD1-220ENST00000556486 GPNMBQ14956 572 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 PWP2Q15269 919 aaKnown RBP11.78□□□□□ -0.52
SCFD1-220ENST00000556486 BTNL9Q6UXG8 535 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 MORC4Q8TE76 937 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 EVI5LQ96CN4 794 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 C17orf80Q9BSJ5 609 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 STX8Q9UNK0 236 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 Q9Y3F1 56 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 USP34Q70CQ2 3546 aa11.78□□□□□ -0.52
SCFD1-220ENST00000556486 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.77□□□□□ -0.53
SCFD1-220ENST00000556486 PTPDC1A2A3K4 754 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 LINC01553A4QN01 128 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 TSPY2A6NKD2 308 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 NFIBO00712 420 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 NMT2O60551 498 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 CALML3P27482 149 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 SLC16A2P36021 539 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 HDAC1Q13547 482 aaPredicted RBP11.77□□□□□ -0.53
SCFD1-220ENST00000556486 PTGISQ16647 500 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 LEXMQ3ZCV2 418 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 B4GALNT3Q6L9W6 998 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 SLC30A10Q6XR72 485 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 LAPTM4BQ86VI4 370 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 DCAF4Q8WV16 495 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 CRBNQ96SW2 442 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 INCENPQ9NQS7 918 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 HELLSQ9NRZ9 838 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 TCP11L1Q9NUJ3 509 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 PRR12Q9ULL5 1215 aa11.77□□□□□ -0.53
SCFD1-220ENST00000556486 BAIAP3O94812 1187 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 ICAM1P05362 532 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 PCP11498 1178 aaKnown RBP11.76□□□□□ -0.53
SCFD1-220ENST00000556486 BFSP2Q13515 415 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 VPS53Q5VIR6 699 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 GDF6Q6KF10 455 aaPredicted RBP11.76□□□□□ -0.53
SCFD1-220ENST00000556486 HFE2Q6ZVN8 426 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 DHX38Q92620 1227 aaKnown RBP11.76□□□□□ -0.53
SCFD1-220ENST00000556486 TGS1Q96RS0 853 aaKnown RBP11.76□□□□□ -0.53
SCFD1-220ENST00000556486 CTAGE1Q96RT6 745 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 RANBP17Q9H2T7 1088 aaKnown RBP11.76□□□□□ -0.53
SCFD1-220ENST00000556486 PNMA2Q9UL42 364 aa11.76□□□□□ -0.53
SCFD1-220ENST00000556486 DCXO43602 365 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 NBNO60934 754 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 CSPG5O95196 566 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 CFHP08603 1231 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 ALADP13716 330 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 NT5C2P49902 561 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 PDE1AP54750 535 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 RRP1P56182 461 aaKnown RBP11.75□□□□□ -0.53
SCFD1-220ENST00000556486 PPP2R5BQ15173 497 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 CLUL1Q15846 466 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 CCDC96Q2M329 555 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 TTBK2Q6IQ55 1244 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 NFRKBQ6P4R8 1299 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 CHST3Q7LGC8 479 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 SEPT9Q9UHD8 586 aaPredicted RBP11.75□□□□□ -0.53
SCFD1-220ENST00000556486 ATG2AQ2TAZ0 1938 aa11.75□□□□□ -0.53
SCFD1-220ENST00000556486 GOLGA8CPA6NN73 597 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 ARIH2O95376 493 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 GJB5O95377 273 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 FGAP02671 866 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 SNHG28P0DPA3 235 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 TXNP10599 105 aaKnown RBP11.74□□□□□ -0.53
SCFD1-220ENST00000556486 TOP1P11387 765 aaKnown RBP11.74□□□□□ -0.53
SCFD1-220ENST00000556486 ERVK-21P61565 698 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 NR1H3Q13133 447 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 AAMPQ13685 434 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 ELOAQ14241 798 aaKnown RBP11.74□□□□□ -0.53
SCFD1-220ENST00000556486 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.74□□□□□ -0.53
SCFD1-220ENST00000556486 LRRC8DQ7L1W4 858 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 WNT2BQ93097 391 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 TTC14Q96N46 770 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 RAD9AQ99638 391 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 MAF1Q9H063 256 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 LMCD1Q9NZU5 365 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 FRMPD2Q68DX3 1309 aaPredicted RBP11.74□□□□□ -0.53
SCFD1-220ENST00000556486 CFAP54Q96N23 3096 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 NLRC5Q86WI3 1866 aa11.74□□□□□ -0.53
SCFD1-220ENST00000556486 RBM47A0AV96 593 aaKnown RBP11.73□□□□□ -0.53
SCFD1-220ENST00000556486 RANBP6O60518 1105 aaKnown RBP11.73□□□□□ -0.53
SCFD1-220ENST00000556486 SELPP16109 830 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms