RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 SCLYQ96I15 445 aa13.57□□□□□ -0.24
VRK1-204ENST00000555351 GPR20Q99678 358 aa13.57□□□□□ -0.24
VRK1-204ENST00000555351 TUT1Q9H6E5 874 aaKnown RBP13.57□□□□□ -0.24
VRK1-204ENST00000555351 RTEL1Q9NZ71 1219 aa13.57□□□□□ -0.24
VRK1-204ENST00000555351 ZNF215Q9UL58 517 aaPredicted RBP13.57□□□□□ -0.24
VRK1-204ENST00000555351 SLC4A7Q9Y6M7 1214 aa13.57□□□□□ -0.24
VRK1-204ENST00000555351 hCG_1642624A0A1W2PR95 340 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 STXBP3O00186 592 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 EIF5BO60841 1220 aaKnown RBP13.56□□□□□ -0.24
VRK1-204ENST00000555351 CAND2O75155 1236 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 LGALS2P05162 132 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 GNAT1P11488 350 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 KCNA2P16389 499 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 CDC27P30260 824 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 ADCY7P51828 1080 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 MTMR1Q13613 665 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 UBE2SQ16763 222 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 PFKFB3Q16875 520 aaPredicted RBP13.56□□□□□ -0.24
VRK1-204ENST00000555351 CYFIP1Q7L576 1253 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 OTOP2Q7RTS6 562 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 SERINC5Q86VE9 423 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 CCDC12Q8WUD4 166 aaPredicted RBP13.56□□□□□ -0.24
VRK1-204ENST00000555351 BRF1Q92994 677 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 CDX2Q99626 313 aaPredicted RBP13.56□□□□□ -0.24
VRK1-204ENST00000555351 ALG1Q9BT22 464 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 PBX4Q9BYU1 374 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 ZSWIM6Q9HCJ5 1215 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 JADE2Q9NQC1 790 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 CXXC1Q9P0U4 656 aaPredicted RBP13.56□□□□□ -0.24
VRK1-204ENST00000555351 MSRAQ9UJ68 235 aa13.56□□□□□ -0.24
VRK1-204ENST00000555351 SMCO2A6NFE2 343 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 PRPF3O43395 683 aaKnown RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 CXCL10P02778 98 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 CKBP12277 381 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 SCG2P13521 617 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 ITGB5P18084 799 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 ADD1P35611 737 aaKnown RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 CLK2P49760 499 aaKnown RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 CHMP4BP1P59074 171 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 APOBRQ0VD83 1088 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 TYW1BQ6NUM6 668 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 RUFY3Q7L099 469 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 LRRC8DQ7L1W4 858 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 NIPA1Q7RTP0 329 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 FAM177A1Q8N128 213 aaPredicted RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 DHX38Q92620 1227 aaKnown RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 ZFP91Q96JP5 570 aaPredicted RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 SLC9A7Q96T83 725 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 ZNF576Q9H609 170 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 PCDHA11Q9Y5I1 949 aa13.55□□□□□ -0.24
VRK1-204ENST00000555351 LAMA2P24043 3122 aaKnown RBP13.55□□□□□ -0.24
VRK1-204ENST00000555351 C17orf102A2RUQ5 167 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 EFCAB14O75071 495 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 IFNAR1P17181 557 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 SREBF1P36956 1147 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 TRIM71Q2Q1W2 868 aaKnown RBP13.54□□□□□ -0.24
VRK1-204ENST00000555351 SEPT1Q8WYJ6 367 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 FAM161BQ96MY7 647 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 MXRA8Q9BRK3 442 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 RNF26Q9BY78 433 aaPredicted RBP13.54□□□□□ -0.24
VRK1-204ENST00000555351 ZMYND12Q9H0C1 365 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 BCAS3Q9H6U6 928 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 CYP46A1Q9Y6A2 500 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 NFASCO94856 1347 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 EMSYQ7Z589 1322 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 SCN5AQ14524 2016 aa13.54□□□□□ -0.24
VRK1-204ENST00000555351 ATP9AO75110 1047 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 SMIM10L2AP0DMW4 78 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 SMIM10L2BP0DMW5 78 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 CPA1P15085 419 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 ATP2A2P16615 1042 aaKnown RBP13.53□□□□□ -0.24
VRK1-204ENST00000555351 GNA11P29992 359 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 NTRK3Q16288 839 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 CEP55Q53EZ4 464 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 CNKSR3Q6P9H4 555 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 DEFB128Q7Z7B8 93 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 PPP1R13LQ8WUF5 828 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 TNPO1Q92973 898 aaKnown RBP13.53□□□□□ -0.24
VRK1-204ENST00000555351 ATP6V0A1Q93050 837 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 ZNF274Q96GC6 653 aaPredicted RBP13.53□□□□□ -0.24
VRK1-204ENST00000555351 ANO3Q9BYT9 981 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 FTOQ9C0B1 505 aaKnown RBP eCLIP13.53□□□□□ -0.24
VRK1-204ENST00000555351 RNPEPQ9H4A4 650 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 SLC28A3Q9HAS3 691 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 C6orf50Q9HD87 102 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 SH3GLB2Q9NR46 395 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 KCNH7Q9NS40 1196 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 NAP1L2Q9ULW6 460 aaPredicted RBP13.53□□□□□ -0.24
VRK1-204ENST00000555351 NRCAMQ92823 1304 aa13.53□□□□□ -0.24
VRK1-204ENST00000555351 ABHD14A-ACY1A0A1B0GW23 586 aa13.52□□□□□ -0.25
VRK1-204ENST00000555351 ZBBXA8MT70 800 aa13.52□□□□□ -0.25
VRK1-204ENST00000555351 GRXCR1A8MXD5 290 aa13.52□□□□□ -0.25
VRK1-204ENST00000555351 MEIS1O00470 390 aa13.52□□□□□ -0.25
VRK1-204ENST00000555351 RPLP2P05387 115 aaKnown RBP13.52□□□□□ -0.25
VRK1-204ENST00000555351 CENPBP07199 599 aaPredicted RBP13.52□□□□□ -0.25
VRK1-204ENST00000555351 CYP3A4P08684 503 aa13.52□□□□□ -0.25
VRK1-204ENST00000555351 PDIA3P30101 505 aaKnown RBP13.52□□□□□ -0.25
VRK1-204ENST00000555351 TCF7P36402 384 aaPredicted RBP13.52□□□□□ -0.25
VRK1-204ENST00000555351 PBX2P40425 430 aa13.52□□□□□ -0.25
VRK1-204ENST00000555351 ANAPC15P60006 121 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms