RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PRPF38AQ8NAV1 312 aaKnown RBP16.48■□□□□ 0.23
SHMT2-208ENST00000553868 TMEM87AQ8NBN3 555 aa16.48■□□□□ 0.23
SHMT2-208ENST00000553868 SLF1Q9BQI6 1058 aa16.48■□□□□ 0.23
SHMT2-208ENST00000553868 ZMYND12Q9H0C1 365 aa16.48■□□□□ 0.23
SHMT2-208ENST00000553868 CNPY2Q9Y2B0 182 aa16.48■□□□□ 0.23
SHMT2-208ENST00000553868 SMCO2A6NFE2 343 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 KIF28PB7ZC32 967 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 FIBPO43427 364 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 CD4P01730 458 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 ADCY7P51828 1080 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 MRPL12P52815 198 aaKnown RBP16.47■□□□□ 0.23
SHMT2-208ENST00000553868 GRB10Q13322 594 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 SKOR2Q2VWA4 1001 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-208ENST00000553868 MCTP2Q6DN12 878 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 FAM173BQ6P4H8 233 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 KIFC2Q96AC6 838 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 ATG4CQ96DT6 458 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 MMP19Q99542 508 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 HIPK3Q9H422 1215 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 HOXC10Q9NYD6 342 aa16.47■□□□□ 0.23
SHMT2-208ENST00000553868 CTDP1Q9Y5B0 961 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-208ENST00000553868 A0A0U1RQG5 324 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-208ENST00000553868 TLR3O15455 904 aaKnown RBP16.46■□□□□ 0.23
SHMT2-208ENST00000553868 ADCY6O43306 1168 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 C6orf222P0C671 652 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-208ENST00000553868 IL9P15248 144 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 TTLL4Q14679 1199 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 ZNF792Q3KQV3 632 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 KRT25Q7Z3Z0 450 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 SCLYQ96I15 445 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 SPATA32Q96LK8 384 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 WNT8AQ9H1J5 351 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 RANBP17Q9H2T7 1088 aaKnown RBP16.46■□□□□ 0.23
SHMT2-208ENST00000553868 RTEL1Q9NZ71 1219 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 PCDHA1Q9Y5I3 950 aa16.46■□□□□ 0.23
SHMT2-208ENST00000553868 COL4A4P53420 1690 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-208ENST00000553868 CCDC194A0A1B0GVG4 234 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 LPXNO60711 386 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 ZBED4O75132 1171 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 PRPF40AO75400 957 aaKnown RBP16.45■□□□□ 0.22
SHMT2-208ENST00000553868 FLOT1O75955 427 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 YEATS4O95619 227 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 ALADP13716 330 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 TRAPPC10P48553 1259 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 TAP1Q03518 808 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 NR5A1Q13285 461 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 NPY5RQ15761 445 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 TYW1BQ6NUM6 668 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 OXER1Q8TDS5 423 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 CUL5Q93034 780 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 KCNH6Q9H252 994 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 RIC8AQ9NPQ8 531 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 POLR3EQ9NVU0 708 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 TFIP11Q9UBB9 837 aaKnown RBP16.45■□□□□ 0.22
SHMT2-208ENST00000553868 ZHX1Q9UKY1 873 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-208ENST00000553868 PPP1R9AQ9ULJ8 1098 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 CEP131Q9UPN4 1083 aa16.45■□□□□ 0.22
SHMT2-208ENST00000553868 TRIOO75962 3097 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 PPP1R11O60927 126 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-208ENST00000553868 BMP15O95972 392 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 DSG3P32926 999 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 NBR1Q14596 966 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 TMEM132BQ14DG7 1078 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 HFE2Q6ZVN8 426 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 REXO1Q8N1G1 1221 aaKnown RBP16.44■□□□□ 0.22
SHMT2-208ENST00000553868 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-208ENST00000553868 KCNG4Q8TDN1 519 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 LEO1Q8WVC0 666 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-208ENST00000553868 TNFRSF25Q93038 417 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 USP28Q96RU2 1077 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 PSTPIP2Q9H939 334 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 LMBRD1Q9NUN5 540 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 FAM184BQ9ULE4 1060 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 SPTBN4Q9H254 2564 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 COL11A1P12107 1806 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-208ENST00000553868 ABCB11O95342 1321 aa16.44■□□□□ 0.22
SHMT2-208ENST00000553868 C5orf42Q9H799 3197 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 GOLGA6L4A6NEF3 574 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 SNAI1O95863 264 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 MBD3O95983 291 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 CST5P28325 142 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 NASPP49321 788 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 STK38Q15208 465 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 SF3A1Q15459 793 aaKnown RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 CHAMP1Q96JM3 812 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 NOC4LQ9BVI4 516 aaKnown RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 UBE2ZQ9H832 354 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 FBXO28Q9NVF7 368 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 RCOR1Q9UKL0 485 aa16.43■□□□□ 0.22
SHMT2-208ENST00000553868 MRPL11Q9Y3B7 192 aaKnown RBP16.43■□□□□ 0.22
SHMT2-208ENST00000553868 M0R2N6 131 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 DCXO43602 365 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 DUSP11O75319 330 aaKnown RBP16.42■□□□□ 0.22
SHMT2-208ENST00000553868 ICAM1P05362 532 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 UBE2HP62256 183 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 NONOQ15233 471 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHMT2-208ENST00000553868 GNASQ5JWF2 1037 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 PIK3AP1Q6ZUJ8 805 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 MB21D1Q8N884 522 aa16.42■□□□□ 0.22
SHMT2-208ENST00000553868 PCSK9Q8NBP7 692 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms