RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZC3H4Q9UPT8 1303 aaKnown RBP29.33■■■□□ 2.29
CCDC88C-205ENST00000553403 AKR1B15C9JRZ8 316 aaPredicted RBP29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 E4F1Q66K89 784 aaPredicted RBP29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 NIPA1Q7RTP0 329 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 TMEM139Q8IV31 216 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 CPXCR1Q8N123 301 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 SYT2Q8N9I0 419 aaPredicted RBP29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 MXRA8Q9BRK3 442 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 TUFT1Q9NNX1 390 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 NMRK2Q9NPI5 230 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 SSC5DA1L4H1 1573 aa29.32■■■□□ 2.28
CCDC88C-205ENST00000553403 CCP110O43303 1012 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 BCRP11274 1271 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 MUTP22033 750 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 PANX2Q96RD6 677 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 WDR11Q9BZH6 1224 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 FRMD3A2A2Y4 597 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 LGALS16A8MUM7 142 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 EML1O00423 815 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 ARHGAP6O43182 974 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 STX10O60499 249 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 FGFR1OPO95684 399 aaKnown RBP29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 UBXN2AP68543 259 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 LRRC63Q05C16 580 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 GOLGA8FQ08AF8 430 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 GOLGA8DPQ0D2H9 430 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 TRIM14Q14142 442 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 FAM26FQ5R3K3 315 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 BAG1Q99933 345 aaPredicted RBP29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 ADARB2Q9NS39 739 aaKnown RBP29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 ZHX2Q9Y6X8 837 aa29.31■■■□□ 2.28
CCDC88C-205ENST00000553403 FRMPD4Q14CM0 1322 aa29.3■■■□□ 2.28
CCDC88C-205ENST00000553403 USP27XA6NNY8 438 aa29.3■■■□□ 2.28
CCDC88C-205ENST00000553403 VWA5AO00534 786 aa29.3■■■□□ 2.28
CCDC88C-205ENST00000553403 COL20A1Q9P218 1284 aa29.3■■■□□ 2.28
CCDC88C-205ENST00000553403 PHIPQ8WWQ0 1821 aa29.3■■■□□ 2.28
CCDC88C-205ENST00000553403 PARP14Q460N5 1801 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 GAS7O60861 476 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 MUM1L1Q5H9M0 696 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 MYOCDQ8IZQ8 938 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 SYTL5Q8TDW5 730 aaPredicted RBP29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 CCDC51Q96ER9 411 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 C16orf45Q96MC5 204 aaPredicted RBP29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 HSD17B14Q9BPX1 270 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 ZNF577Q9BSK1 485 aa29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 RBBP6Q7Z6E9 1792 aaKnown RBP29.29■■■□□ 2.28
CCDC88C-205ENST00000553403 A0A1W2PQC6 194 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 EYA4O95677 639 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 TPM2P07951 284 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 TPM1P09493 284 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 TNNT1P13805 278 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 OAZ1P54368 228 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 ADKP55263 362 aaKnown RBP29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 RBL2Q08999 1139 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 ARSHQ5FYA8 562 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 NYAP1Q6ZVC0 841 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 CREBRFQ8IUR6 639 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 ATG4CQ96DT6 458 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 RIT2Q99578 217 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 PCDHA2Q9Y5H9 948 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 DDNO94850 711 aaPredicted RBP29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 ARP10275 920 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 UBXN1Q04323 297 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 PCNX4Q63HM2 1172 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 MB21D1Q8N884 522 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 ZNF507Q8TCN5 953 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 CNOT6LQ96LI5 555 aaKnown RBP29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 TSG101Q99816 390 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 TEKT3Q9BXF9 490 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 ADAMTS5Q9UNA0 930 aa29.28■■■□□ 2.28
CCDC88C-205ENST00000553403 KIF20AO95235 890 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 KRT18P05783 430 aaKnown RBP29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 DSG3P32926 999 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 PSMC6P62333 389 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 B3GNT9Q6UX72 402 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 CNGA4Q8IV77 575 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 TRERF1Q96PN7 1200 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 NAA15Q9BXJ9 866 aaKnown RBP29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 RRAGCQ9HB90 399 aa29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 TRMT1Q9NXH9 659 aaKnown RBP29.27■■■□□ 2.28
CCDC88C-205ENST00000553403 KIF2AO00139 706 aaPredicted RBP29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 MFAP3LO75121 409 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 TOMM70O94826 608 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 DNM2P50570 870 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 HMGCS2P54868 508 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 PABPC4Q13310 644 aaKnown RBP eCLIP29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 EPHA7Q15375 998 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 PTPN14Q15678 1187 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 DPY19L2Q6NUT2 758 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 REPS2Q8NFH8 660 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 TUBGCP2Q9BSJ2 902 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 TMOD4Q9NZQ9 345 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 FZD1Q9UP38 647 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 UBIAD1Q9Y5Z9 338 aa29.26■■■□□ 2.27
CCDC88C-205ENST00000553403 USP2O75604 605 aaPredicted RBP29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 GIT2Q14161 759 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 PPP1R13BQ96KQ4 1090 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 RGL1Q9NZL6 768 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 AFG3L2Q9Y4W6 797 aa29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 130.4 ms