RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 LGALS2P05162 132 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 SDSP20132 328 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 MFAP1P55081 439 aaKnown RBP10.56□□□□□ -0.72
SYNE2-209ENST00000553308 ZP2Q05996 745 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 COL19A1Q14993 1142 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 KCNV1Q6PIU1 500 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 STOX1Q6ZVD7 989 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 VSIG10LQ86VR7 867 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 PABPC5Q96DU9 382 aaKnown RBP10.56□□□□□ -0.72
SYNE2-209ENST00000553308 MTMR8Q96EF0 704 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 IFIH1Q9BYX4 1025 aaKnown RBP10.56□□□□□ -0.72
SYNE2-209ENST00000553308 LNPKQ9C0E8 428 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 RNPEPQ9H4A4 650 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 NSUN3Q9H649 340 aaKnown RBP10.56□□□□□ -0.72
SYNE2-209ENST00000553308 TUT1Q9H6E5 874 aaKnown RBP10.56□□□□□ -0.72
SYNE2-209ENST00000553308 MLXIPQ9HAP2 919 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 CLDND1Q9NY35 253 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 ZSWIM5Q9P217 1185 aa10.56□□□□□ -0.72
SYNE2-209ENST00000553308 POTEB3A0JP26 581 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 KLRF2D3W0D1 207 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 ZBTB5O15062 677 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 CCND2P30279 289 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 NT5C2P49902 561 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 MRE11P49959 708 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 NHLH1Q02575 133 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 SLC35G1Q2M3R5 365 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 POTEBQ6S5H4 581 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 CWC27Q6UX04 472 aaKnown RBP10.55□□□□□ -0.72
SYNE2-209ENST00000553308 RPAINQ86UA6 219 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 FCHSD1Q86WN1 690 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 TRIM50Q86XT4 487 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 HOMER1Q86YM7 354 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 FBXL18Q96ME1 805 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 UBAC1Q9BSL1 405 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 SETD4Q9NVD3 440 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 PCDHA1Q9Y5I3 950 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 DOCK5Q9H7D0 1870 aa10.55□□□□□ -0.72
SYNE2-209ENST00000553308 C19orf67A6NJJ6 358 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 NOP56O00567 594 aaKnown RBP10.54□□□□□ -0.72
SYNE2-209ENST00000553308 CAND2O75155 1236 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 CSPG5O95196 566 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 LINC00271P0C7V0 271 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 TGFB3P10600 412 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 CTNNB1P35222 781 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 IRS1P35568 1242 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 LTBRP36941 435 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 DLX2Q07687 328 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-209ENST00000553308 HDAC1Q13547 482 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-209ENST00000553308 CLUL1Q15846 466 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 IFIT1BQ5T764 474 aaKnown RBP10.54□□□□□ -0.72
SYNE2-209ENST00000553308 ADHFE1Q8IWW8 467 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 MAP3K20Q9NYL2 800 aaKnown RBP10.54□□□□□ -0.72
SYNE2-209ENST00000553308 PRKAG3Q9UGI9 489 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 MAD2L2Q9UI95 211 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 FAM50BQ9Y247 325 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 TELO2Q9Y4R8 837 aa10.54□□□□□ -0.72
SYNE2-209ENST00000553308 SUPT16HQ9Y5B9 1047 aaKnown RBP10.54□□□□□ -0.72
SYNE2-209ENST00000553308 GCOM1H8Y6P7 765 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-209ENST00000553308 GRM6O15303 877 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 POLR2MP0CAP2 368 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 RRP1P56182 461 aaKnown RBP10.53□□□□□ -0.72
SYNE2-209ENST00000553308 MRPS9P82933 396 aaKnown RBP10.53□□□□□ -0.72
SYNE2-209ENST00000553308 HYAL1Q12794 435 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 SEMA3FQ13275 785 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 SEC23AQ15436 765 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 IMMTQ16891 758 aaKnown RBP10.53□□□□□ -0.72
SYNE2-209ENST00000553308 HFE2Q6ZVN8 426 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 CYFIP1Q7L576 1253 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 FIBCD1Q8N539 461 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 SAMD3Q8N6K7 520 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 LMBR1Q8WVP7 490 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 APBB2Q92870 758 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 IL17RAQ96F46 866 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 PIGSQ96S52 555 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 GPR20Q99678 358 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 DSCC1Q9BVC3 393 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 KRT23Q9C075 422 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 DIAPH3Q9NSV4 1193 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 ADGRA3Q8IWK6 1321 aa10.53□□□□□ -0.72
SYNE2-209ENST00000553308 PALM3A6NDB9 673 aaPredicted RBP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 C5orf67F2Z3F1 127 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 MBTPS2O43462 519 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 TBX10O75333 385 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 CHRNA1P02708 482 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 GHRP10912 638 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 GTF2F1P35269 517 aaKnown RBP eCLIP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 ADAM17P78536 824 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 ARHGAP4P98171 946 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 SP4Q02446 784 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 SMAD2Q15796 467 aaKnown RBP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 CTC1Q2NKJ3 1217 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 FAM26DQ5JW98 314 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 UTP14CQ5TAP6 766 aaKnown RBP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 METTL7BQ6UX53 244 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 CYB5R4Q7L1T6 521 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 INPP4AQ96PE3 977 aaPredicted RBP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 C11orf84Q9BUA3 381 aaPredicted RBP10.52□□□□□ -0.73
SYNE2-209ENST00000553308 USP26Q9BXU7 913 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 IL25Q9H293 177 aa10.52□□□□□ -0.73
SYNE2-209ENST00000553308 CNNM2Q9H8M5 875 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms