RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 GABRQQ9UN88 632 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 HPSEQ9Y251 543 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 ATP9AO75110 1047 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 MARCKSP29966 332 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-211ENST00000552338 CEBPZQ03701 1054 aaKnown RBP10.81□□□□□ -0.68
LIMA1-211ENST00000552338 PRKCZQ05513 592 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 ITGB3BPQ13352 177 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-211ENST00000552338 ACVR2BQ13705 512 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 NEDD9Q14511 834 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 FOXD4L6Q3SYB3 417 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-211ENST00000552338 MAP3K21Q5TCX8 1036 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 ZNF746Q6NUN9 644 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-211ENST00000552338 SHC4Q6S5L8 630 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 FOXD4L3Q6VB84 417 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-211ENST00000552338 ENGASEQ8NFI3 743 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 CD99L2Q8TCZ2 262 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 SCFD2Q8WU76 684 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 ZNF577Q9BSK1 485 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 GDPD2Q9HCC8 539 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 MRVI1Q9Y6F6 885 aa10.81□□□□□ -0.68
LIMA1-211ENST00000552338 IGKV6D-21A0A0A0MT36 114 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 PRPF40AO75400 957 aaKnown RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 HOXD8P13378 290 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 NCLP19338 710 aaKnown RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 CYP2B6P20813 491 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 SFNP31947 248 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 TXKP42681 527 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 KRT76Q01546 638 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 SP2Q02086 613 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 GRIN1Q05586 938 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 TTLL4Q14679 1199 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 EPHA7Q15375 998 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 TMEM266Q2M3C6 531 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 DUSP28Q4G0W2 176 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 LRCH2Q5VUJ6 765 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 METTL7BQ6UX53 244 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 SMAP1Q8IYB5 467 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 NEK9Q8TD19 979 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 TRIB2Q92519 343 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 HSD17B14Q9BPX1 270 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 PYM1Q9BRP8 204 aaKnown RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 MMTAG2Q9BU76 263 aaKnown RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 TEKT3Q9BXF9 490 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 CSRNP2Q9H175 543 aa10.8□□□□□ -0.68
LIMA1-211ENST00000552338 GNEQ9Y223 722 aaKnown RBP10.8□□□□□ -0.68
LIMA1-211ENST00000552338 VWA3AA6NCI4 1184 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 GAS7O60861 476 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 FARP2O94887 1054 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-211ENST00000552338 LYPLA2O95372 231 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 CYBAP13498 195 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 RPA1P27694 616 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 TECP42680 631 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 ME1P48163 572 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 SNW1Q13573 536 aaKnown RBP10.79□□□□□ -0.68
LIMA1-211ENST00000552338 NFKBIBQ15653 356 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 CCL14Q16627 93 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 CELF3Q5SZQ8 465 aaKnown RBP10.79□□□□□ -0.68
LIMA1-211ENST00000552338 SLAIN1Q8ND83 568 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 TIGD1Q96MW7 591 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 CLIC6Q96NY7 704 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 POLR3CQ9BUI4 534 aaPredicted RBP10.79□□□□□ -0.68
LIMA1-211ENST00000552338 USP25Q9UHP3 1055 aa10.79□□□□□ -0.68
LIMA1-211ENST00000552338 GADD45BO75293 160 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 ARIH2O95376 493 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 SPATA31C1P0DKV0 1188 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 HSPA8P11142 646 aaKnown RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 XRCC6P12956 609 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 UBA1P22314 1058 aaKnown RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 JAK3P52333 1124 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 LAMC2Q13753 1193 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 MFSD14CQ5VZR4 134 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 HAUS3Q68CZ6 603 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 ABHD15Q6UXT9 468 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 SEPT14Q6ZU15 432 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 FBXO16Q8IX29 292 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 FMR1NBQ8N0W7 255 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 AFAP1L1Q8TED9 768 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 MRPS27Q92552 414 aaKnown RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 ZFP91Q96JP5 570 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-211ENST00000552338 SDF4Q9BRK5 362 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 UNC45AQ9H3U1 944 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 TUFT1Q9NNX1 390 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 PDGFCQ9NRA1 345 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 SLC9A2Q9UBY0 812 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 LRWD1Q9UFC0 647 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 PTPN22Q9Y2R2 807 aa10.78□□□□□ -0.68
LIMA1-211ENST00000552338 FRMPD3Q5JV73 1810 aa10.77□□□□□ -0.68
LIMA1-211ENST00000552338 POTEFA5A3E0 1075 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 WDR64B1ANS9 1081 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 EML1O00423 815 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 SEPT4O43236 478 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 ADCY3O60266 1144 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 LGR5O75473 907 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 SLITRK3O94933 977 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 MBD3O95983 291 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 HMGCRP04035 888 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 P4HBP07237 508 aaKnown RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 TXNP10599 105 aaKnown RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 AKR1A1P14550 325 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 CTCFP49711 727 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms