RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 RIN3Q8TB24 985 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 GAL3ST3Q96A11 431 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 ZNF669Q96BR6 464 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-208ENST00000551691 KIRREL1Q96J84 757 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 CAPNS2Q96L46 248 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 FOXQ1Q9C009 403 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 IRF2BPLQ9H1B7 796 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 C19orf73Q9NVV2 129 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 GMIPQ9P107 970 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 LRP2BPQ9P2M1 347 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 ZMYM5Q9UJ78 669 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 MCM8Q9UJA3 840 aa4.94□□□□□ -1.62
LIMA1-208ENST00000551691 CUL9Q8IWT3 2517 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 DIAPH1O60610 1272 aaKnown RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 EIF5BO60841 1220 aaKnown RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 ATE1O95260 518 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 CBX7O95931 251 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 PDGFRBP09619 1106 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 CPEP16870 476 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 FBLN1P23142 703 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 ETF1P62495 437 aaKnown RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 AMPD3Q01432 767 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 SLC7A5Q01650 507 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 C21orf62-AS1Q17RA5 79 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 TKFCQ3LXA3 575 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 BBS9Q3SYG4 887 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 GNPTABQ3T906 1256 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 ZC3H12BQ5HYM0 836 aaKnown RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 OVOS1Q6IE37 1185 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 LCNL1Q6ZST4 164 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 CYFIP1Q7L576 1253 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 NLRC3Q7RTR2 1065 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 CCAR1Q8IX12 1150 aaKnown RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 NIM1KQ8IY84 436 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 PHACTR4Q8IZ21 702 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 MFSD3Q96ES6 412 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 PLPPR2Q96GM1 343 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 SPATA9Q9BWV2 254 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 PCGF6Q9BYE7 350 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 EPN3Q9H201 632 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 SEMA3GQ9NS98 782 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 TYW1Q9NV66 732 aaKnown RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 CHPF2Q9P2E5 772 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 REV1Q9UBZ9 1251 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 POLR3KQ9Y2Y1 108 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-208ENST00000551691 TOGARAM1Q9Y4F4 1720 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 SNCAIPQ9Y6H5 919 aa4.93□□□□□ -1.62
LIMA1-208ENST00000551691 PIK3C2AO00443 1686 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 SLIT3O75094 1523 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 PALLDQ8WX93 1383 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 CCDC88AQ3V6T2 1871 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 CCDC163A0A0D9SF12 145 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 MEIS3P2A8K0S8 358 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 WASH4PA8MWX3 477 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 FANCGO15287 622 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 PARNO95453 639 aaKnown RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 PGRP06401 933 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 GLI1P08151 1106 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 MYCLP1P12525 358 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 GYS1P13807 737 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 AFMP43652 599 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 CLCN7P51798 805 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 SV2CQ496J9 727 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 KIAA1211LQ6NV74 962 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 C1QL4Q86Z23 238 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 LRRC56Q8IYG6 542 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 CNTROBQ8N137 903 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 MFSD4AQ8N468 514 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 KCNH5Q8NCM2 988 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 PIGBQ92521 554 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 DHRS1Q96LJ7 313 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 KRTAP4-2Q9BYR5 136 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 TAF1DQ9H5J8 278 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 NSUN3Q9H649 340 aaKnown RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 ANTXR1Q9H6X2 564 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 SRP68Q9UHB9 627 aaKnown RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 C5P01031 1676 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 TTC21BQ7Z4L5 1316 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 BRCA1P38398 1863 aaKnown RBP4.92□□□□□ -1.62
LIMA1-208ENST00000551691 ITSN1Q15811 1721 aa4.92□□□□□ -1.62
LIMA1-208ENST00000551691 KIF13BQ9NQT8 1826 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 BRCA2P51587 3418 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 IRS4O14654 1257 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-208ENST00000551691 SUSD5O60279 629 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 LRIG2O94898 1065 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 C1QTNF9P0C862 333 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 YARSP54577 528 aaKnown RBP4.91□□□□□ -1.62
LIMA1-208ENST00000551691 DDR1Q08345 913 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 SLBPQ14493 270 aaKnown RBP eCLIP4.91□□□□□ -1.62
LIMA1-208ENST00000551691 SFRP5Q5T4F7 317 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 CST9Q5W186 159 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 UNC5AQ6ZN44 842 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 LDHDQ86WU2 507 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 DHX37Q8IY37 1157 aaKnown RBP4.91□□□□□ -1.62
LIMA1-208ENST00000551691 RPUSD2Q8IZ73 545 aaKnown RBP4.91□□□□□ -1.62
LIMA1-208ENST00000551691 TAB3Q8N5C8 712 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-208ENST00000551691 USHBP1Q8N6Y0 703 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 ATL2Q8NHH9 583 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 ZNF507Q8TCN5 953 aa4.91□□□□□ -1.62
LIMA1-208ENST00000551691 UBE2FQ969M7 185 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms