RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ARL4AP40617 200 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 ID4P47928 161 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 LSSP48449 732 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 EXOSC10Q01780 885 aaKnown RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 CHRNA2Q15822 529 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 BRDTQ58F21 947 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 STEAP3Q658P3 488 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 CREB3L3Q68CJ9 461 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 BICRALQ6AI39 1079 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 CABP7Q86V35 215 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 PTRH1Q86Y79 214 aaKnown RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 FLAD1Q8NFF5 587 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 CHTF18Q8WVB6 975 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 BOCQ9BWV1 1114 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 PDGFDQ9GZP0 370 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 IRF2BPLQ9H1B7 796 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 SMOC1Q9H4F8 434 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 RC3H2Q9HBD1 1191 aaKnown RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 METTL14Q9HCE5 456 aaKnown RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 DSEQ9UL01 958 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 APOBEC2Q9Y235 224 aaKnown RBP6.74□□□□□ -1.33
LIMA1-205ENST00000550592 MAN2B1O00754 1011 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 HGSO14964 777 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-205ENST00000550592 MAFKO60675 156 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 KRT15P19012 456 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 AFMP43652 599 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 GUCY2FP51841 1108 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 IL2P60568 153 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 OCRLQ01968 901 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 SPATS2Q86XZ4 545 aaKnown RBP6.73□□□□□ -1.33
LIMA1-205ENST00000550592 NLGN4XQ8N0W4 816 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 ABHD4Q8TB40 342 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 SEC14L1Q92503 715 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 GPR101Q96P66 508 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-205ENST00000550592 TNFRSF12AQ9NP84 129 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 OXSMQ9NWU1 459 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 THG1LQ9NWX6 298 aaKnown RBP6.73□□□□□ -1.33
LIMA1-205ENST00000550592 SLC5A4Q9NY91 659 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 SRPK3Q9UPE1 567 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 NUB1Q9Y5A7 615 aa6.73□□□□□ -1.33
LIMA1-205ENST00000550592 MYO15BQ96JP2 1530 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 CLASP2O75122 1294 aaKnown RBP6.72□□□□□ -1.33
LIMA1-205ENST00000550592 CYBBP04839 570 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 DBHP09172 617 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 KPNA1P52294 538 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-205ENST00000550592 EPHA5P54756 1037 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 ERVFRD-1P60508 538 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 FAM50AQ14320 339 aaKnown RBP6.72□□□□□ -1.33
LIMA1-205ENST00000550592 FIGNQ5HY92 759 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 PAQR3Q6TCH7 311 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 DCP2Q8IU60 420 aaKnown RBP6.72□□□□□ -1.33
LIMA1-205ENST00000550592 NOSTRINQ8IVI9 506 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 ABI1Q8IZP0 508 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 PHOSPHO1Q8TCT1 267 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 SCYL1Q96KG9 808 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 PUS7LQ9H0K6 701 aaKnown RBP6.72□□□□□ -1.33
LIMA1-205ENST00000550592 SPTLC3Q9NUV7 552 aa6.72□□□□□ -1.33
LIMA1-205ENST00000550592 YBX2Q9Y2T7 364 aaKnown RBP6.72□□□□□ -1.33
LIMA1-205ENST00000550592 SGSM2O43147 1006 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 GALK1P51570 392 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 ATP13A4Q4VNC1 1196 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 C11orf74Q86VG3 221 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 SIRT2Q8IXJ6 389 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 EFHBQ8N7U6 833 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 DLG3Q92796 817 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 RNF32Q9H0A6 362 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 AP5M1Q9H0R1 490 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 EMC7Q9NPA0 242 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 ZNF652Q9Y2D9 606 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 B3GALT1Q9Y5Z6 326 aa6.71□□□□□ -1.34
LIMA1-205ENST00000550592 H7C1D1 291 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 DVL2O14641 736 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 KCNK3O14649 394 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 SLC27A2O14975 620 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 GP2P55259 537 aaKnown RBP6.7□□□□□ -1.34
LIMA1-205ENST00000550592 TMPRSS15P98073 1019 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 IRF9Q00978 393 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 NR1I3Q14994 352 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 ARTNQ5T4W7 220 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 FYB2Q5VWT5 728 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 EP400NLQ6ZTU2 488 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 KCTD1Q719H9 257 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 TRIM48Q8IWZ4 208 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 PEX11GQ96HA9 241 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 CEP89Q96ST8 783 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 CD244Q9BZW8 370 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 H2AFY2Q9P0M6 372 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-205ENST00000550592 MYOTQ9UBF9 498 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 ASH2LQ9UBL3 628 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 NUDT5Q9UKK9 219 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 SIT1Q9Y3P8 196 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 TELO2Q9Y4R8 837 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 SPO11Q9Y5K1 396 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 ATP23Q9Y6H3 246 aa6.7□□□□□ -1.34
LIMA1-205ENST00000550592 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-205ENST00000550592 ZC3H12DA2A288 527 aaKnown RBP6.69□□□□□ -1.34
LIMA1-205ENST00000550592 TGM5O43548 720 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 KATNA1O75449 491 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 ZBTB7AO95365 584 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 MPOP05164 745 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms