RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 YBX2Q9Y2T7 364 aaKnown RBP12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 RSPH10B2B2RC85 870 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 RSPH10BP0C881 870 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 RXRAP19793 462 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 FGD1P98174 961 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 RTN1Q16799 776 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 PPP1R18Q6NYC8 613 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 APOA5Q6Q788 366 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 HEATR3Q7Z4Q2 680 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 CMTR1Q8N1G2 835 aaKnown RBP12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 CCDC82Q8N4S0 544 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 DHX38Q92620 1227 aaKnown RBP12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 GPKOWQ92917 476 aaPredicted RBP eCLIP12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 CCDC136Q96JN2 1154 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZFP91Q96JP5 570 aaPredicted RBP12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZBED2Q9BTP6 218 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 LRRC2Q9BYS8 371 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 A0A0C4DFX4 3053 aa12.48□□□□□ -0.41
VTI1BP3-201ENST00000550220 BAZ2BQ9UIF8 2168 aaKnown RBP12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 CUL9Q8IWT3 2517 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 NRCAMQ92823 1304 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 GTPBP6O43824 516 aaPredicted RBP12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 SORBS3O60504 671 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 LGR5O75473 907 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 RPLP2P05387 115 aaKnown RBP12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 CA3P07451 260 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 SMIM10L2AP0DMW4 78 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 SMIM10L2BP0DMW5 78 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 IGFBP4P22692 258 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 HOXC8P31273 242 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 THPOP40225 353 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 SEMA3FQ13275 785 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 MTMR1Q13613 665 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 TRIM71Q2Q1W2 868 aaKnown RBP12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZNF618Q5T7W0 954 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 MCTP2Q6DN12 878 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 ATXN2LQ8WWM7 1075 aaKnown RBP12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 SEPT1Q8WYJ6 367 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 RNPEPQ9H4A4 650 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 RIC8AQ9NPQ8 531 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 RNF216Q9NWF9 866 aaPredicted RBP12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 PCDHA6Q9UN73 950 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 PCDHA8Q9Y5H6 950 aa12.47□□□□□ -0.41
VTI1BP3-201ENST00000550220 EPB41L2O43491 1005 aaKnown RBP12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 TLL1O43897 1013 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 NBNO60934 754 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 REC8O95072 547 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 POU3F3P20264 500 aaPredicted RBP12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 PSMA5P28066 241 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 NAPAP54920 295 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 WDR5P61964 334 aaKnown RBP12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZNF200P98182 395 aaPredicted RBP12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 GPNMBQ14956 572 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 TAF2Q6P1X5 1199 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 KCNB2Q92953 911 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 RAD9AQ99638 391 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 COL25A1Q9BXS0 654 aaPredicted RBP12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 JADE2Q9NQC1 790 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 UBIAD1Q9Y5Z9 338 aa12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 V9GY48 417 aaPredicted RBP12.46□□□□□ -0.41
VTI1BP3-201ENST00000550220 MYH6P13533 1939 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 KLF18A0A0U1RQI7 1052 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 GJB5O95377 273 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 AMHP03971 560 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 MYOGP15173 224 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 ITGB5P18084 799 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 TCF7P36402 384 aaPredicted RBP12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 ADCY7P51828 1080 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 AP3B2Q13367 1082 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 ADGRE1Q14246 886 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 TJAP1Q5JTD0 557 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 UTP14CQ5TAP6 766 aaKnown RBP12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 TRAF7Q6Q0C0 670 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 RPAINQ86UA6 219 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 RSPH3Q86UC2 560 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 RASEFQ8IZ41 740 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 FBXL16Q8N461 479 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 CCDC12Q8WUD4 166 aaPredicted RBP12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 SEPT8Q92599 483 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 SMARCAD1Q9H4L7 1026 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 SETD4Q9NVD3 440 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 BARHL2Q9NY43 387 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 ERAP1Q9NZ08 941 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 BRPF3Q9ULD4 1205 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 KIAA1217Q5T5P2 1943 aa12.45□□□□□ -0.42
VTI1BP3-201ENST00000550220 CNTNAP5Q8WYK1 1306 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 hCG_1642624A0A1W2PR95 340 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 SMCO2A6NFE2 343 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 RRN3P2A6NIE6 340 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 GOLGA8AA7E2F4 631 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 GOLGA8BA8MQT2 603 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 TREHO43280 583 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 KCNA2P16389 499 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 HSPA4P34932 840 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 METAP2P50579 478 aaKnown RBP eCLIP12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 FUT2Q10981 343 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 UBE2SQ16763 222 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 ADCK5Q3MIX3 580 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 WWC2Q6AWC2 1192 aa12.44□□□□□ -0.42
VTI1BP3-201ENST00000550220 FAM43BQ6ZT52 329 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms