RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 KRT71Q3SY84 523 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 SFR1Q86XK3 245 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 RIOK1Q9BRS2 568 aaKnown RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 MLXIPQ9HAP2 919 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 ZNF277Q9NRM2 450 aaPredicted RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 SCAF8Q9UPN6 1271 aaKnown RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 AGTPBP1Q9UPW5 1226 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 ATP2A1O14983 1001 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 ATP1A2P50993 1020 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 PTPAQ15257 358 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 EEPD1Q7L9B9 569 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 WDR24Q96S15 920 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 WDR11Q9BZH6 1224 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 MYCP01106 439 aaPredicted RBP17.81■□□□□ 0.44
CUX1-213ENST00000549414 MYL7Q01449 175 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 LRRC63Q05C16 580 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 NCAPG2Q86XI2 1143 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 SP8Q8IXZ3 490 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 LRRC45Q96CN5 670 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 NACC1Q96RE7 527 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 IWS1Q96ST2 819 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 ADGRG1Q9Y653 693 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.81■□□□□ 0.44
CUX1-213ENST00000549414 LIN9Q5TKA1 542 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.81■□□□□ 0.44
CUX1-213ENST00000549414 FUCA2Q9BTY2 467 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 PARVGQ9HBI0 331 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 AS3MTQ9HBK9 375 aa17.81■□□□□ 0.44
CUX1-213ENST00000549414 PSMC2P35998 433 aaKnown RBP17.8■□□□□ 0.44
CUX1-213ENST00000549414 PLEKHG2Q9H7P9 1386 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 DMP1Q13316 513 aaPredicted RBP17.8■□□□□ 0.44
CUX1-213ENST00000549414 SEPT9Q9UHD8 586 aaPredicted RBP17.8■□□□□ 0.44
CUX1-213ENST00000549414 GOLGA8IPA6NC78 632 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 GOLGA8JA6NMD2 632 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 GOLGA5Q8TBA6 731 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 PCDHA13Q9Y5I0 950 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 COL5A2P05997 1499 aaPredicted RBP17.8■□□□□ 0.44
CUX1-213ENST00000549414 POLGP54098 1239 aaPredicted RBP17.8■□□□□ 0.44
CUX1-213ENST00000549414 MESDQ14696 234 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 KCTD16Q68DU8 428 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 BARGINQ6ZT62 677 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 RAD54LQ92698 747 aa17.8■□□□□ 0.44
CUX1-213ENST00000549414 VIMP08670 466 aaKnown RBP17.79■□□□□ 0.44
CUX1-213ENST00000549414 TOB1P50616 345 aaPredicted RBP17.79■□□□□ 0.44
CUX1-213ENST00000549414 SLC7A5Q01650 507 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 COASYQ13057 564 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 BRDTQ58F21 947 aaPredicted RBP17.79■□□□□ 0.44
CUX1-213ENST00000549414 CEP85LQ5SZL2 805 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 FAM184BQ9ULE4 1060 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 JCADQ9P266 1359 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 CNGA1P29973 690 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 MNAT1P51948 309 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 UAP1Q16222 522 aaPredicted RBP17.79■□□□□ 0.44
CUX1-213ENST00000549414 TRIM9Q9C026 710 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 PSMD2Q13200 908 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 NTRK3Q16288 839 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 FAM47CQ5HY64 1035 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 ANKRD40Q6AI12 368 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 TTC19Q6DKK2 380 aaPredicted RBP17.79■□□□□ 0.44
CUX1-213ENST00000549414 ZNF354CQ86Y25 554 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 CEP170P1Q96L14 293 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 AGXT2Q9BYV1 514 aa17.79■□□□□ 0.44
CUX1-213ENST00000549414 IQCGQ9H095 443 aaKnown RBP17.79■□□□□ 0.44
CUX1-213ENST00000549414 PSMD1Q99460 953 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 CHP1Q99653 195 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 SPZ1Q9BXG8 430 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 ST7Q9NRC1 585 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 C1orf112Q9NSG2 853 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 LRRC53A6NM62 1247 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 FXR1P51114 621 aaKnown RBP eCLIP17.78■□□□□ 0.44
CUX1-213ENST00000549414 DPYDQ12882 1025 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 STK4Q13043 487 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 RCSD1Q6JBY9 416 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 CCDC170Q8IYT3 715 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 TRPC6Q9Y210 931 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 TCRBV5S4A2TA0A5A2 114 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 PPM1FP49593 454 aaPredicted RBP17.78■□□□□ 0.44
CUX1-213ENST00000549414 PPFIA1Q13136 1202 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 CCDC121Q6ZUS5 278 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 PPP1R14CQ8TAE6 165 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 DCAF4Q8WV16 495 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 HDAC6Q9UBN7 1215 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 IFT172Q9UG01 1749 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 GAP43P17677 238 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 NWD1Q149M9 1564 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 CIAPIN1Q6FI81 312 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 SEPT14Q6ZU15 432 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 PHLDB2Q86SQ0 1253 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 BANK1Q8NDB2 785 aa17.78■□□□□ 0.44
CUX1-213ENST00000549414 CTNNA1P35221 906 aaKnown RBP17.77■□□□□ 0.44
CUX1-213ENST00000549414 SLC27A3Q5K4L6 730 aa17.77■□□□□ 0.44
CUX1-213ENST00000549414 MSANTD4Q8NCY6 345 aa17.77■□□□□ 0.44
CUX1-213ENST00000549414 SH2D3AQ9BRG2 576 aa17.77■□□□□ 0.44
CUX1-213ENST00000549414 IFNB1P01574 187 aa17.77■□□□□ 0.44
CUX1-213ENST00000549414 IGBP1P78318 339 aa17.77■□□□□ 0.44
CUX1-213ENST00000549414 PIM2Q9P1W9 311 aa17.77■□□□□ 0.44
CUX1-213ENST00000549414 STXBP3O00186 592 aa17.77■□□□□ 0.43
CUX1-213ENST00000549414 NT5C2P49902 561 aa17.77■□□□□ 0.43
CUX1-213ENST00000549414 GYS2P54840 703 aa17.77■□□□□ 0.43
CUX1-213ENST00000549414 ZNF543Q08ER8 600 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms