RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 TMEM260Q9NX78 707 aa13.57□□□□□ -0.24
YBX3-217ENST00000546164 STK36Q9NRP7 1315 aa13.57□□□□□ -0.24
YBX3-217ENST00000546164 LAMA2P24043 3122 aaKnown RBP13.57□□□□□ -0.24
YBX3-217ENST00000546164 MEIS1O00470 390 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 PPFIA3O75145 1194 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 CYP3A4P08684 503 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 FXR1P51114 621 aaKnown RBP eCLIP13.56□□□□□ -0.24
YBX3-217ENST00000546164 ARHGAP4P98171 946 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 CEP55Q53EZ4 464 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 JAKMIP3Q5VZ66 844 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 MFSD5Q6N075 450 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 CYFIP1Q7L576 1253 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 NIPA1Q7RTP0 329 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 PGBD1Q96JS3 809 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 GPR20Q99678 358 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 C16orf70Q9BSU1 422 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 BCAS3Q9H6U6 928 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 VPS54Q9P1Q0 977 aa13.56□□□□□ -0.24
YBX3-217ENST00000546164 NOP56O00567 594 aaKnown RBP13.55□□□□□ -0.24
YBX3-217ENST00000546164 ADAMTS3O15072 1205 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 ATP9AO75110 1047 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 RBM25P49756 843 aaKnown RBP13.55□□□□□ -0.24
YBX3-217ENST00000546164 PSEN2P49810 448 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 ME3Q16798 604 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 LRIT3Q3SXY7 679 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 FAM47CQ5HY64 1035 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 GALNT17Q6IS24 598 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 GTF3C6Q969F1 213 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 KIF2CQ99661 725 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 NOC4LQ9BVI4 516 aaKnown RBP13.55□□□□□ -0.24
YBX3-217ENST00000546164 HIPK3Q9H422 1215 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 KCNH7Q9NS40 1196 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 TRMT13Q9NUP7 481 aaKnown RBP13.55□□□□□ -0.24
YBX3-217ENST00000546164 SZT2Q5T011 3432 aa13.55□□□□□ -0.24
YBX3-217ENST00000546164 SORBS3O60504 671 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 CTDNEP1O95476 244 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 LGALS2P05162 132 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 ZNF286BP0CG31 522 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 NLRP5P59047 1200 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 FPGSQ05932 587 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 MFSD10Q14728 455 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 KIAA0753Q2KHM9 967 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 DAGLBQ8NCG7 672 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 CYP2W1Q8TAV3 490 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 C22orf23Q9BZE7 217 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 GTF2IRD1Q9UHL9 959 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 PCDHA4Q9UN74 947 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 NFASCO94856 1347 aa13.54□□□□□ -0.24
YBX3-217ENST00000546164 IGLV3-22A0A075B6J6 115 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 FAM86B1E9PN63 330 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 M0R2N6 131 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 LARGE1O95461 756 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 FAM86B2P0C5J1 330 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 CIITAP33076 1130 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 EPHB4P54760 987 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 PPIGQ13427 754 aaKnown RBP eCLIP13.53□□□□□ -0.245e-7■■■□□ 14.7
YBX3-217ENST00000546164 NPY5RQ15761 445 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 TMEM199Q8N511 208 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 C7orf31Q8N865 590 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 RASGRP4Q8TDF6 673 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 CTAGE1Q96RT6 745 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 PPP1R12CQ9BZL4 782 aa13.53□□□□□ -0.24
YBX3-217ENST00000546164 AGO4Q9HCK5 861 aaKnown RBP13.53□□□□□ -0.24
YBX3-217ENST00000546164 MYH7BA7E2Y1 1941 aa13.52□□□□□ -0.24
YBX3-217ENST00000546164 H3BRB1 525 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 ARP10275 920 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 CYP2C9P11712 490 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 HOXC8P31273 242 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 CYP2C18P33260 490 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 ZNF76P36508 570 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 SETQ01105 290 aaPredicted RBP13.52□□□□□ -0.25
YBX3-217ENST00000546164 RBL2Q08999 1139 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 PTGISQ16647 500 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 C9orf50Q5SZB4 431 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 GDF6Q6KF10 455 aaPredicted RBP13.52□□□□□ -0.25
YBX3-217ENST00000546164 BLIDQ8IZY5 108 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 NECAB1Q8N987 351 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 IL27Q8NEV9 243 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 SEPT1Q8WYJ6 367 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 WASF1Q92558 559 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 AIFM3Q96NN9 605 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 WNT8AQ9H1J5 351 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 TUT1Q9H6E5 874 aaKnown RBP13.52□□□□□ -0.25
YBX3-217ENST00000546164 JPH1Q9HDC5 661 aaPredicted RBP13.52□□□□□ -0.25
YBX3-217ENST00000546164 ORC3Q9UBD5 711 aaPredicted RBP13.52□□□□□ -0.25
YBX3-217ENST00000546164 HDAC6Q9UBN7 1215 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 ZNF215Q9UL58 517 aaPredicted RBP13.52□□□□□ -0.25
YBX3-217ENST00000546164 TELO2Q9Y4R8 837 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 UMODL1Q5DID0 1318 aa13.52□□□□□ -0.25
YBX3-217ENST00000546164 GSTTP1A0A1W2PQM5 241 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 EDIL3O43854 480 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 FDPSP14324 419 aaKnown RBP13.51□□□□□ -0.25
YBX3-217ENST00000546164 CSF2RAP15509 400 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 XBP1P17861 261 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 TCF7P36402 384 aaPredicted RBP13.51□□□□□ -0.25
YBX3-217ENST00000546164 USP11P51784 963 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 ITGB3BPQ13352 177 aaPredicted RBP13.51□□□□□ -0.25
YBX3-217ENST00000546164 BFSP2Q13515 415 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 SHHQ15465 462 aa13.51□□□□□ -0.25
YBX3-217ENST00000546164 PLA2G4DQ86XP0 818 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms