RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 ANO3Q9BYT9 981 aa13.5□□□□□ -0.25
HDAC4-216ENST00000544989 UPF3BQ9BZI7 483 aaKnown RBP13.5□□□□□ -0.25
HDAC4-216ENST00000544989 PPP1R12CQ9BZL4 782 aa13.5□□□□□ -0.25
HDAC4-216ENST00000544989 ZMYND12Q9H0C1 365 aa13.5□□□□□ -0.25
HDAC4-216ENST00000544989 IL23AQ9NPF7 189 aa13.5□□□□□ -0.25
HDAC4-216ENST00000544989 JADE2Q9NQC1 790 aa13.5□□□□□ -0.25
HDAC4-216ENST00000544989 TRMT13Q9NUP7 481 aaKnown RBP13.5□□□□□ -0.25
HDAC4-216ENST00000544989 ZNF215Q9UL58 517 aaPredicted RBP13.5□□□□□ -0.25
HDAC4-216ENST00000544989 UBIAD1Q9Y5Z9 338 aa13.5□□□□□ -0.25
HDAC4-216ENST00000544989 HAS3O00219 553 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 CYP2C18P33260 490 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 SREBF1P36956 1147 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 CLK2P49760 499 aaKnown RBP13.49□□□□□ -0.25
HDAC4-216ENST00000544989 CHMP4BP1P59074 171 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 SMAD3P84022 425 aaKnown RBP13.49□□□□□ -0.25
HDAC4-216ENST00000544989 NTRK3Q16288 839 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 PTGISQ16647 500 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 KIAA0753Q2KHM9 967 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 FAM109BQ6ICB4 259 aaPredicted RBP13.49□□□□□ -0.25
HDAC4-216ENST00000544989 TYW1BQ6NUM6 668 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 NIPA1Q7RTP0 329 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 REXO1Q8N1G1 1221 aaKnown RBP13.49□□□□□ -0.25
HDAC4-216ENST00000544989 MXRA8Q9BRK3 442 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 SLC26A6Q9BXS9 759 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 C22orf23Q9BZE7 217 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 GTF2IRD1Q9UHL9 959 aa13.49□□□□□ -0.25
HDAC4-216ENST00000544989 H3BRB1 525 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 DEXIO95424 95 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 LGALS2P05162 132 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 ZNF286BP0CG31 522 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 GNAT1P11488 350 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 CSF2RAP15509 400 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 ITGB5P18084 799 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 ZNF76P36508 570 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 CCT2P78371 535 aaKnown RBP13.48□□□□□ -0.25
HDAC4-216ENST00000544989 SEMA3FQ13275 785 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 PKN1Q16512 942 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 CEP55Q53EZ4 464 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 C9orf50Q5SZB4 431 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 GALNT17Q6IS24 598 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 AFAP1L1Q8TED9 768 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 TNPO1Q92973 898 aaKnown RBP13.48□□□□□ -0.25
HDAC4-216ENST00000544989 PHKBQ93100 1093 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 GPR20Q99678 358 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 SLKQ9H2G2 1235 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-216ENST00000544989 TUT1Q9H6E5 874 aaKnown RBP13.48□□□□□ -0.25
HDAC4-216ENST00000544989 MYH7BA7E2Y1 1941 aa13.48□□□□□ -0.25
HDAC4-216ENST00000544989 TMEM265A0A087WTH1 108 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 FGBP02675 491 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 CYP3A4P08684 503 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 CYP2C9P11712 490 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 KCNA2P16389 499 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 XBP1P17861 261 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 ARHGAP4P98171 946 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 SETQ01105 290 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-216ENST00000544989 RBL2Q08999 1139 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 PTK7Q13308 1070 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 TMEM240Q5SV17 173 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 SEPT1Q8WYJ6 367 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 ZFP91Q96JP5 570 aaPredicted RBP13.47□□□□□ -0.25
HDAC4-216ENST00000544989 SDF4Q9BRK5 362 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 C16orf70Q9BSU1 422 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 ALG1Q9BT22 464 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 NCOA5Q9HCD5 579 aaKnown RBP13.47□□□□□ -0.25
HDAC4-216ENST00000544989 HDAC6Q9UBN7 1215 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 BDP1A6H8Y1 2624 aa13.47□□□□□ -0.25
HDAC4-216ENST00000544989 NFASCO94856 1347 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.46□□□□□ -0.25
HDAC4-216ENST00000544989 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.46□□□□□ -0.25
HDAC4-216ENST00000544989 MEIS1O00470 390 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 ACTN1P12814 892 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 EPHB4P54760 987 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 CCL23P55773 120 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 GDF6Q6KF10 455 aaPredicted RBP13.46□□□□□ -0.25
HDAC4-216ENST00000544989 HERVK_113Q902F9 699 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.46□□□□□ -0.257e-7■■□□□ 13.4
HDAC4-216ENST00000544989 WNT8AQ9H1J5 351 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 JPH1Q9HDC5 661 aaPredicted RBP13.46□□□□□ -0.25
HDAC4-216ENST00000544989 KCNH7Q9NS40 1196 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 SLC9A2Q9UBY0 812 aa13.46□□□□□ -0.25
HDAC4-216ENST00000544989 C17orf102A2RUQ5 167 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 SORBS3O60504 671 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 PFKFB2O60825 505 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 CAND2O75155 1236 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 RPLP2P05387 115 aaKnown RBP13.45□□□□□ -0.26
HDAC4-216ENST00000544989 SELPP16109 830 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 NLRP5P59047 1200 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 ZNF697Q5TEC3 545 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 RASIP1Q5U651 963 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 JAKMIP3Q5VZ66 844 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 ZNF365Q70YC5 407 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 Q7L0L9 218 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 IL27Q8NEV9 243 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 WASF1Q92558 559 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 SMARCAD1Q9H4L7 1026 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 AZI2Q9H6S1 392 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 ERAP1Q9NZ08 941 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 TCEAL9Q9UHQ7 104 aa13.45□□□□□ -0.26
HDAC4-216ENST00000544989 UMODL1Q5DID0 1318 aa13.44□□□□□ -0.26
HDAC4-216ENST00000544989 NRCAMQ92823 1304 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms