RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NAA25Q14CX7 972 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 SLC39A14Q15043 492 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 NCAPH2Q6IBW4 605 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 PGBD3Q8N328 593 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 MYCT1Q8N699 235 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ENOX1Q8TC92 643 aaKnown RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 MAP4K1Q92918 833 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 C1orf112Q9NSG2 853 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 TBC1D7Q9P0N9 293 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 TARSL2A2RTX5 802 aaKnown RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 USP17L5A8MUK1 530 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 B4E1Z4 1266 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC188H7C350 402 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ZW10O43264 779 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ANKRD20A3Q5VUR7 823 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 MIER3Q7Z3K6 550 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 PALM2Q8IXS6 379 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF654Q8IZM8 581 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 SERTAD1Q9UHV2 236 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 POLIQ9UNA4 740 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ALKQ9UM73 1620 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF532Q9HCE3 1301 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DENND3A2RUS2 1198 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 PPP1R12AO14974 1030 aaPredicted RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DAPK3O43293 454 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 CEP104O60308 925 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MAN2A1Q16706 1144 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MUM1Q2TAK8 710 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 PIP4K2CQ8TBX8 421 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 SERPINI1Q99574 410 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 WDR11Q9BZH6 1224 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 VPS33BQ9H267 617 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ARMT1Q9H993 441 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MRPL47Q9HD33 250 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 AKAP7Q9P0M2 348 aaPredicted RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MTMR6Q9Y217 621 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF804BA4D1E1 1349 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ECE2O60344 883 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 HIP1RO75146 1068 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DDX5P17844 614 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 KRT9P35527 623 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 PSMC2P35998 433 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ETF1P62495 437 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MYL7Q01449 175 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 RCSD1Q6JBY9 416 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 SDCCAG3Q96C92 435 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 PPP1R2P1Q96PQ5 205 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 SYT17Q9BSW7 474 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DDX25Q9UHL0 483 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 TACC3Q9Y6A5 838 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 AP3B1O00203 1094 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MAP3K13O43283 966 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 AFPP02771 609 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ERCC3P19447 782 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MAP2K2P36507 400 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 BIRC3Q13489 604 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 C6orf118Q5T5N4 469 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ISM2Q6H9L7 571 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 EMBQ6PCB8 327 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DDX42Q86XP3 938 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 GSDMBQ8TAX9 411 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DTNBP1Q96EV8 351 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 CAPNS2Q96L46 248 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 PSMD1Q99460 953 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DONSONQ9NYP3 566 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 KRIT1O00522 736 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 GCNT3O95395 438 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 AP3B2Q13367 1082 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 BEND3Q5T5X7 828 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 GIMAP8Q8ND71 665 aaPredicted RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DCAF4Q8WV16 495 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 KIF2CQ99661 725 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 RIOK1Q9BRS2 568 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ELP3Q9H9T3 547 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 SCINQ9Y6U3 715 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 CSPG5O95196 566 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 TTC4O95801 387 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 SLC12A2P55011 1212 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 GNGT1P63211 74 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 DMP1Q13316 513 aaPredicted RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 KRT81Q14533 505 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ZSCAN26Q16670 478 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 ATG16L1Q676U5 607 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 CACTINQ8WUQ7 758 aaKnown RBP8.47□□□□□ -1.05
VPS13D-211ENST00000543710 NLRP7Q8WX94 980 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 VPS16Q9H269 839 aa8.47□□□□□ -1.05
VPS13D-211ENST00000543710 MAP3K15Q6ZN16 1313 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 GOLGA8MH3BSY2 632 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 PODXLO00592 558 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 EXOC3O60645 756 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 DCTN3O75935 186 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 AP3M2P53677 418 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 MTX1Q13505 466 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 POLA2Q14181 598 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 FAM212AQ96EL1 285 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 EFHD1Q9BUP0 239 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 PANK2Q9BZ23 570 aa8.46□□□□□ -1.05
VPS13D-211ENST00000543710 XPO4Q9C0E2 1151 aaKnown RBP8.46□□□□□ -1.05
VPS13D-211ENST00000543710 KIAA0391O15091 583 aaKnown RBP8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms