RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	DUSP11	O75319	330 aa	Known RBP	11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	KCNA2	P16389	499 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	PTGS1	P23219	599 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	MARCKS	P29966	332 aa	Predicted RBP	11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	KRT85	P78386	507 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	ITGB3BP	Q13352	177 aa	Predicted RBP	11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	TMEM266	Q2M3C6	531 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	ATL3	Q6DD88	541 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	DTHD1	Q6ZMT9	781 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	TLK2	Q86UE8	772 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	ETNPPL	Q8TBG4	499 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	SLC5A5	Q92911	643 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	ARMC5	Q96C12	935 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	ZNF333	Q96JL9	665 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	DEFB118	Q96PH6	123 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	RIT2	Q99578	217 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	TMEM106C	Q9BVX2	250 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	BCAS3	Q9H6U6	928 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	JPH1	Q9HDC5	661 aa	Predicted RBP	11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	KCNMB3	Q9NPA1	279 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	PCDHA12	Q9UN75	941 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	SAMM50	Q9Y512	469 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	CASP8AP2	Q9UKL3	1982 aa		11.47	□□□□□ -0.57
CPSF7-221	ENST00000543545	NFASC	O94856	1347 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	PGK1	P00558	417 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	TFRC	P02786	760 aa	Known RBP	11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	C6orf222	P0C671	652 aa	Predicted RBP	11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	TEC	P42680	631 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	ATP2C1	P98194	919 aa	Predicted RBP	11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	NCAPH2	Q6IBW4	605 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	METTL7B	Q6UX53	244 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	AFG1L	Q8WV93	481 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	HAS1	Q92839	578 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	CHAMP1	Q96JM3	812 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	MTMR9	Q96QG7	549 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	TTC12	Q9H892	705 aa	Predicted RBP	11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	XPNPEP3	Q9NQH7	507 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	POLR3E	Q9NVU0	708 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	SLC9A2	Q9UBY0	812 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	GNE	Q9Y223	722 aa	Known RBP	11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545		Q9Y3F1	56 aa		11.46	□□□□□ -0.57
CPSF7-221	ENST00000543545	MYH6	P13533	1939 aa		11.46	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZSWIM8	A7E2V4	1837 aa		11.46	□□□□□ -0.58
CPSF7-221	ENST00000543545	PLXNB2	O15031	1838 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	VWA3A	A6NCI4	1184 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	SPTLC2	O15270	562 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	DHX15	O43143	795 aa	Known RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	ADCY6	O43306	1168 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZEB2	O60315	1214 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	FARP2	O94887	1054 aa	Predicted RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	NASP	P49321	788 aa	Predicted RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	KRT76	Q01546	638 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	ARHGAP1	Q07960	439 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	SLC39A14	Q15043	492 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	FSCN1	Q16658	493 aa	Known RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	TPRN	Q4KMQ1	711 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	GNAS	Q5JWF2	1037 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	UTP14C	Q5TAP6	766 aa	Known RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	MIER3	Q7Z3K6	550 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	RNF180	Q86T96	592 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	C4orf32	Q8N8J7	132 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	LINC00301	Q8NCQ3	95 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	SEPT1	Q8WYJ6	367 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	TNPO1	Q92973	898 aa	Known RBP	11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	SPATA32	Q96LK8	384 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	RAB34	Q9BZG1	259 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	UNC45A	Q9H3U1	944 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	DOCK3	Q8IZD9	2030 aa		11.45	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZNF236	Q9UL36	1845 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	BACH1	O14867	736 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	PSMD10	O75832	226 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	YEATS4	O95619	227 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	MYL3	P08590	195 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	PRPH	P41219	470 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	ME1	P48163	572 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	CPT1A	P50416	773 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	GJA9	P57773	515 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	CHMP4BP1	P59074	171 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	ACTR2	P61160	394 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	BEX3	Q00994	111 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	PTPA	Q15257	358 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	HSDL1	Q3SXM5	330 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	ARL6IP4	Q66PJ3	421 aa	Known RBP	11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZNF746	Q6NUN9	644 aa	Predicted RBP	11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	MIS18BP1	Q6P0N0	1132 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	ARRDC4	Q8NCT1	418 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	PPTC7	Q8NI37	304 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	KCNG4	Q8TDN1	519 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	FERMT2	Q96AC1	680 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	VTI1A	Q96AJ9	217 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	SCAND2P	Q9GZW5	306 aa	Predicted RBP	11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	AZI2	Q9H6S1	392 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	PAK6	Q9NQU5	681 aa	Predicted RBP	11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	DISC1	Q9NRI5	854 aa		11.44	□□□□□ -0.58
CPSF7-221	ENST00000543545	ELP1	O95163	1332 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	SYNRG	Q9UMZ2	1314 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	WDR64	B1ANS9	1081 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	CCNE2	O96020	404 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	PSAP	P07602	524 aa		11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms