RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 SLC39A14Q15043 492 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 SPDYE16A6NNV3 312 aaPredicted RBP20.84■□□□□ 0.93
HDAC4-215ENST00000543185 JAK2O60674 1132 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 TMEM191BP0C7N4 346 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 CA4P22748 312 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 SPDYE2Q495Y8 402 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 NHEJ1Q9H9Q4 299 aaPredicted RBP20.84■□□□□ 0.93
HDAC4-215ENST00000543185 ATP8B3O60423 1300 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 MYH11P35749 1972 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 LARP4BQ92615 738 aaKnown RBP20.84■□□□□ 0.93
HDAC4-215ENST00000543185 USP40Q9NVE5 1235 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 MTMR6Q9Y217 621 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 NR2F2P24468 414 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 L3MBTL1Q9Y468 752 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 GCFC2P16383 781 aaKnown RBP20.84■□□□□ 0.93
HDAC4-215ENST00000543185 MRPS15P82914 257 aaKnown RBP20.84■□□□□ 0.93
HDAC4-215ENST00000543185 ITKQ08881 620 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 NDUFA10O95299 355 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 STX19Q8N4C7 294 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 MED10Q9BTT4 135 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 ARHGEF37A1IGU5 675 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 HIBADHP31937 336 aaKnown RBP20.84■□□□□ 0.93
HDAC4-215ENST00000543185 KCTD6Q8NC69 237 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 SENP1Q9P0U3 644 aa20.84■□□□□ 0.93
HDAC4-215ENST00000543185 PDE8AO60658 829 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 NFATC2IPQ8NCF5 419 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 NGLY1Q96IV0 654 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 CNGA3Q16281 694 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 FAM102BQ5T8I3 360 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 MIF4GDA9UHW6 222 aaKnown RBP20.83■□□□□ 0.93
HDAC4-215ENST00000543185 XPOTO43592 962 aaKnown RBP20.83■□□□□ 0.93
HDAC4-215ENST00000543185 TMOD1P28289 359 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 TRPC1P48995 793 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 PPARAQ07869 468 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 FAM26FQ5R3K3 315 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.83■□□□□ 0.938e-7■■■■■ 61.3
HDAC4-215ENST00000543185 C10orf88Q9H8K7 445 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 INTUQ9ULD6 942 aa20.83■□□□□ 0.93
HDAC4-215ENST00000543185 ZBTB12Q9Y330 459 aaPredicted RBP20.83■□□□□ 0.93
HDAC4-215ENST00000543185 ZNF532Q9HCE3 1301 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 NUGGCQ68CJ6 796 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 PYROXD1Q8WU10 500 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 CHURC1Q8WUH1 139 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 MPP6Q9NZW5 540 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 BLOC1S6Q9UL45 172 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 SMARCA1P28370 1054 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 KIAA2013Q8IYS2 634 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 CNBD1Q8NA66 436 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 GDAP1Q8TB36 358 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 NSFL1CQ9UNZ2 370 aaKnown RBP20.83■□□□□ 0.92
HDAC4-215ENST00000543185 KDM5CP41229 1560 aa20.83■□□□□ 0.92
HDAC4-215ENST00000543185 PMLP29590 882 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 KIF9Q9HAQ2 790 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 KCNJ14Q9UNX9 436 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 KIAA0556O60303 1618 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 SPOPLQ6IQ16 392 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 ZNF653Q96CK0 615 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 AATFQ9NY61 560 aaKnown RBP eCLIP20.82■□□□□ 0.92
HDAC4-215ENST00000543185 C2orf54Q08AI8 447 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 TBCCQ15814 346 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 KLHL38Q2WGJ6 581 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 SCYL2Q6P3W7 929 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 RFX6Q8HWS3 928 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 DNAJC17Q9NVM6 304 aaKnown RBP20.82■□□□□ 0.92
HDAC4-215ENST00000543185 SEMA3FQ13275 785 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 ASPSCR1Q9BZE9 553 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 PLEKHA4Q9H4M7 779 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 MYCLP12524 364 aaPredicted RBP20.82■□□□□ 0.92
HDAC4-215ENST00000543185 NAF1Q96HR8 494 aaKnown RBP20.82■□□□□ 0.92
HDAC4-215ENST00000543185 A2MP01023 1474 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 DNAAF3Q8N9W5 541 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 JARID2Q92833 1246 aaPredicted RBP20.82■□□□□ 0.92
HDAC4-215ENST00000543185 TMEM206Q9H813 350 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 GMNCA6NCL1 334 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 RBL2Q08999 1139 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 THOC5Q13769 683 aaKnown RBP20.82■□□□□ 0.92
HDAC4-215ENST00000543185 CYP4F22Q6NT55 531 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 KLC2Q9H0B6 622 aa20.82■□□□□ 0.92
HDAC4-215ENST00000543185 DDX5P17844 614 aaKnown RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 PTGDRQ13258 359 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 TNRQ92752 1358 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 KPNA7A9QM74 516 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 MED21Q13503 144 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 CAPN12Q6ZSI9 719 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 TRIM45Q9H8W5 580 aaPredicted RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 ATP6V0A4Q9HBG4 840 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 VIRMAQ69YN4 1812 aaKnown RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 SEC31AO94979 1220 aaKnown RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 KRT75O95678 551 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 KRR1Q13601 381 aaKnown RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 RNF26Q9BY78 433 aaPredicted RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 HP1BP3Q5SSJ5 553 aaPredicted RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 TTC37Q6PGP7 1564 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 FOSP01100 380 aaPredicted RBP20.81■□□□□ 0.92
HDAC4-215ENST00000543185 USP28Q96RU2 1077 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 PPARDQ03181 441 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 KLC4Q9NSK0 619 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 ABCC4O15439 1325 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 E2F6O75461 281 aa20.81■□□□□ 0.92
HDAC4-215ENST00000543185 PDE6AP16499 860 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms