RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 KIAA1217Q5T5P2 1943 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.78□□□□□ -0.2
DDX55-210ENST00000543016 A6NJR5 290 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 MSH4O15457 936 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 DYNC1LI2O43237 492 aaPredicted RBP13.78□□□□□ -0.2
DDX55-210ENST00000543016 MARCH6O60337 910 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 NEMFO60524 1076 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 PPFIA4O75335 1185 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 ARIH2O95376 493 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 GGPS1O95749 300 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 F13A1P00488 732 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 DDIT3P35638 169 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 TOB1P50616 345 aaPredicted RBP13.78□□□□□ -0.2
DDX55-210ENST00000543016 KRT76Q01546 638 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 ARHGAP1Q07960 439 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 LY6KQ17RY6 165 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 FERMT3Q86UX7 667 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 KLHDC9Q8NEP7 349 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 OR6J1Q8NGC5 347 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 PPTC7Q8NI37 304 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 ABHD8Q96I13 439 aa13.78□□□□□ -0.2
DDX55-210ENST00000543016 ZFP91Q96JP5 570 aaPredicted RBP13.78□□□□□ -0.2
DDX55-210ENST00000543016 ZNF396Q96N95 335 aaPredicted RBP13.78□□□□□ -0.2
DDX55-210ENST00000543016 JPH1Q9HDC5 661 aaPredicted RBP13.78□□□□□ -0.2
DDX55-210ENST00000543016 NOP56O00567 594 aaKnown RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 GAS7O60861 476 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 ATP9AO75110 1047 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 ADAMTS4O75173 837 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 FARP2O94887 1054 aaPredicted RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 TFRCP02786 760 aaKnown RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 ATP2B1P20020 1258 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 MCM7P33993 719 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 SP2Q02086 613 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 KIAA0100Q14667 2235 aaKnown RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 CALCRLQ16602 461 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 FSCN1Q16658 493 aaKnown RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 ZNF746Q6NUN9 644 aaPredicted RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 SMAP1Q8IYB5 467 aaPredicted RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 RDM1Q8NG50 284 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 ETNPPLQ8TBG4 499 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 TEKT3Q9BXF9 490 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 POLR3EQ9NVU0 708 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 SLC9A2Q9UBY0 812 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 SYNRGQ9UMZ2 1314 aa13.77□□□□□ -0.21
DDX55-210ENST00000543016 MORC2Q9Y6X9 1032 aaPredicted RBP13.77□□□□□ -0.21
DDX55-210ENST00000543016 MOXD2PA6NHM9 499 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 DNM1LO00429 736 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 DHX15O43143 795 aaKnown RBP13.76□□□□□ -0.21
DDX55-210ENST00000543016 ADCY6O43306 1168 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 SLC37A4O43826 429 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 CABYRO75952 493 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 C6orf222P0C671 652 aaPredicted RBP13.76□□□□□ -0.21
DDX55-210ENST00000543016 HOXD8P13378 290 aaPredicted RBP13.76□□□□□ -0.21
DDX55-210ENST00000543016 SFNP31947 248 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 PRPHP41219 470 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 ITGB3BPQ13352 177 aaPredicted RBP13.76□□□□□ -0.21
DDX55-210ENST00000543016 ZNF174Q15697 407 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 DGKDQ16760 1214 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 GNASQ5JWF2 1037 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 LRCH2Q5VUJ6 765 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 ARL6IP4Q66PJ3 421 aaKnown RBP13.76□□□□□ -0.21
DDX55-210ENST00000543016 CYFIP1Q7L576 1253 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 SEPT1Q8WYJ6 367 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 SPATA33Q96N06 139 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 MTMR9Q96QG7 549 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 SEZ6LQ9BYH1 1024 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 CFAP45Q9UL16 551 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 STK24Q9Y6E0 443 aa13.76□□□□□ -0.21
DDX55-210ENST00000543016 KBTBD13C9JR72 458 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 PSMD10O75832 226 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 PGK1P00558 417 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 MYCP01106 439 aaPredicted RBP13.75□□□□□ -0.21
DDX55-210ENST00000543016 OR52Z1P0C646 297 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 JAK3P52333 1124 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 PPP2R5CQ13362 524 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 LRRC41Q15345 812 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 AFG1LQ8WV93 481 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 HAS1Q92839 578 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 COPS5Q92905 334 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 RAB34Q9BZG1 259 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 PCDHA12Q9UN75 941 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 PCDHB6Q9Y5E3 794 aa13.75□□□□□ -0.21
DDX55-210ENST00000543016 ELP1O95163 1332 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 WDR64B1ANS9 1081 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 CTAGE5O15320 804 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 ATG7O95352 703 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 MMP3P08254 477 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 SLC26A2P50443 739 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 ATP2C1P98194 919 aaPredicted RBP13.74□□□□□ -0.21
DDX55-210ENST00000543016 PTGDRQ13258 359 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 TMEM266Q2M3C6 531 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 GJC2Q5T442 439 aaPredicted RBP13.74□□□□□ -0.21
DDX55-210ENST00000543016 ANO1Q5XXA6 986 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 CCSAPQ6IQ19 270 aaPredicted RBP13.74□□□□□ -0.21
DDX55-210ENST00000543016 MIS18BP1Q6P0N0 1132 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 B3GNT9Q6UX72 402 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 C4orf32Q8N8J7 132 aa13.74□□□□□ -0.21
DDX55-210ENST00000543016 TNPO1Q92973 898 aaKnown RBP13.74□□□□□ -0.21
DDX55-210ENST00000543016 GPR20Q99678 358 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms