RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RALGAPA2Q2PPJ7 1873 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 MYO15AQ9UKN7 3530 aa5.68□□□□□ -1.5
LIMS1-214ENST00000542845 RSPH10B2B2RC85 870 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 PRDM1O75626 825 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 RSPH10BP0C881 870 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 CASTP20810 708 aaKnown RBP5.67□□□□□ -1.5
LIMS1-214ENST00000542845 MCCP23508 829 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 ICAM3P32942 547 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 BMPR1AP36894 532 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 THPOP40225 353 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 STAT2P52630 851 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 PUM1Q14671 1186 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIMS1-214ENST00000542845 MBTPS1Q14703 1052 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 TTF1Q15361 905 aaPredicted RBP5.67□□□□□ -1.5
LIMS1-214ENST00000542845 LY6KQ17RY6 165 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 TKFCQ3LXA3 575 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 ARSIQ5FYB1 569 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 CTR9Q6PD62 1173 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 KCTD1Q719H9 257 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 ADGRD2Q7Z7M1 963 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 AACSQ86V21 672 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 DHX37Q8IY37 1157 aaKnown RBP5.67□□□□□ -1.5
LIMS1-214ENST00000542845 ZNF444Q8N0Y2 327 aaPredicted RBP5.67□□□□□ -1.5
LIMS1-214ENST00000542845 KCTD17Q8N5Z5 321 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 KREMEN2Q8NCW0 462 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 MICAL1Q8TDZ2 1067 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 CHURC1Q8WUH1 139 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 AFG1LQ8WV93 481 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 TSC1Q92574 1164 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 WNT8BQ93098 351 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 TOP1MTQ969P6 601 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 PPP2R3CQ969Q6 453 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 IL17RAQ96F46 866 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 MSLNLQ96KJ4 702 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 CTAGE1Q96RT6 745 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 C11orf84Q9BUA3 381 aaPredicted RBP5.67□□□□□ -1.5
LIMS1-214ENST00000542845 ATP8A2Q9NTI2 1148 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 CLEC1BQ9P126 229 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 CCPG1Q9ULG6 757 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 PCDHGC5Q9Y5F6 944 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 MYH7BA7E2Y1 1941 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 LCTP09848 1927 aa5.67□□□□□ -1.5
LIMS1-214ENST00000542845 TCRBV5S4A2TA0A5A2 114 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 RBM47A0AV96 593 aaKnown RBP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 PER2O15055 1255 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 NKRFO15226 690 aaKnown RBP eCLIP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SORBS3O60504 671 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 EYA4O95677 639 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 RB1P06400 928 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 CTSHP09668 335 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 FDX1P10109 184 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 RASA1P20936 1047 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 IBSPP21815 317 aaPredicted RBP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SLC1A4P43007 532 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 PSEN2P49810 448 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 RBM10P98175 930 aaKnown RBP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 PTK7Q13308 1070 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 CBX2Q14781 532 aaPredicted RBP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 RSPO4Q2I0M5 234 aaPredicted RBP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 KIAA0753Q2KHM9 967 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SEPT14Q6ZU15 432 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 NUDT18Q6ZVK8 323 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 DCLK2Q8N568 766 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SMRP1Q8NCR6 262 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SCFD2Q8WU76 684 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 STAG1Q8WVM7 1258 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SEPT8Q92599 483 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 KAT2BQ92831 832 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 CEP95Q96GE4 821 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 MPHOSPH6Q99547 160 aaKnown RBP5.66□□□□□ -1.5
LIMS1-214ENST00000542845 LMAN2LQ9H0V9 348 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 SMOC2Q9H3U7 446 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 HCSTQ9UBK5 93 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 GTF2IRD1Q9UHL9 959 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 CACNA1BQ00975 2339 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 MYO10Q9HD67 2058 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 EMSYQ7Z589 1322 aa5.66□□□□□ -1.5
LIMS1-214ENST00000542845 CACNA1GO43497 2377 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 DCHS1Q96JQ0 3298 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 DMDP11532 3685 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.65□□□□□ -1.5
LIMS1-214ENST00000542845 NFIBO00712 420 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 ARIH2O95376 493 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 BRD1O95696 1058 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 TTLL1O95922 423 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 GH1P01241 217 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 LMNAP02545 664 aaKnown RBP5.65□□□□□ -1.5
LIMS1-214ENST00000542845 CHGBP05060 677 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 MMP3P08254 477 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 ZNF286BP0CG31 522 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 CD46P15529 392 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 DNAJB1P25685 340 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 ATP8B2P98198 1209 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 COASYQ13057 564 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 BTG3Q14201 252 aaPredicted RBP5.65□□□□□ -1.5
LIMS1-214ENST00000542845 ANGPT1Q15389 498 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 PLEKHG4Q58EX7 1191 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 LLGL2Q6P1M3 1020 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 TRAF7Q6Q0C0 670 aa5.65□□□□□ -1.5
LIMS1-214ENST00000542845 SLC30A10Q6XR72 485 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms